Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01210 ATGGGTTACGATTCGGATAGCCCCTCTCAAGATGGGAGGGATGAAGATGATGAAGAAGAATATGAGGAGTCTGGCAAGGGTAATCGTTTTCTGGGGTTCATGTTTGGAAATGTTGATAATTCTGGTGATCTCGACGTTGATTATCTTGATGAGGATGCAAAGGAGCATCTCTCTGCACTGGCTGACAAGCTGGGTTCATCACTGACAGATATAGATTTGTCAGGAAAATCACCACAAACACAACCTGACGTTGTTGAACAAGACTGTGGTGAAAAAGCTGAAGATGCAGTTGATTATGAAGATATTGATGAAGAGTATGATGGTCCTGAGACTGAAACTGCCAATGAAGAGGAGTATTTATTGCCAAAAAAGGAATTTTTCTCTGCTGAAGTCTCTCTTGAAGCTTTGGAGTCCAGAGCTTCTGTCTTTGATGATGAAAATTATGATGAAGAGTCTGACAAGGAACAAGACGTAGTGAATAACGATTCCAAAGTTGATAACATCTCATTAGCTGGGGTGCAGGAAGAGAGTTTTGTAGGTGCATCTAAAGTAGAGAGCGCTCTCGAACATGATTTACAAGCTGGCTCACTTCAGAGTGAAGAATTGGACACTGATGCACAAAAACTTGAGGAGGAAGGGCCTGAAGTTTTGAAGAAGTCCACAGCTGCACCATTGCCTGTTTTGTATGTGGAAGATGGGATGGCAGTTTTGCGCTTCTCTGAAATCTTTGGTATTCATGAACCTCTTAGAAAGGGAGAAAAGAGAGAGCATCGACATTCCACTCCTGGAGATAGATACAAATCTTTGGATTTATCTGATGATATTGTAGAAGAGGATGAAGAGGGATTCCTCAAAGGCTTTAGTCAGAGTCTCTCGCTTACTAAACAAGTTTGTGTAGTCAGTAATGATGTATCAGAAAGCAATGATGTTGACTTGGAATTTCCAAAATTTGGATTTCTTCATGGGGATGCCTCAATGGCTTTGAAAGATGATCGGCTACCAAAGGACTCTTGTCTTTGTGCTGAACCAATGAAAGGGGATTTCACAGAAGATCTGCCCTGGAAAGATCATCCTTTTACGTGGGCGAACTTTTACCCTCTTGATCAGCGGGACTGGGAGCATGAAATTCTTTGGGGAGATTCTCCTGTTGCAAGTGATAATAATGTTGAGAGCTGTGAAATTTCTGGACCGGAATTGGGAGCTTCTGGTGGCAGTGAAAGAGAAATTGAAAGTGGGATACATAATCTTAGGTTGGAGTCCAAGAAGATACTGGATGAGAAAGATCATACTGTCTTCATGTGCTGCTCTCCCGTCTCATTGGAACCCTTTGGCTCAAGGGATTCTTCTGGATCTAAAACCAATTTAATGTCCAGAAGTCTATTTCATCCCCAACTTCTGAGGCTAGAATCCAGATATGAAGTGGATGGTTCTAGTCTTGCGGATGGAAGAGGGGAAGATATATCTGAGACTGAGAAGCATAAGCAAAGTGATCAAGTAAAGCGTTTTACCAAAGTTATGTCACAAAACAGAGACCTGATGGAGGGCTCATGGTTAGACAAGATAATATGGGAGGAGCTTGATCAGCCTACGATGAAACCAAAGCTTATATTTGATCTTCGGGATGATCAAATGCACTTTGAAGTTTTGGATAAGAAGGATGGTACACATCTTCGCCTTCATGCTGGGGCTATGATTTTAACTCATTCTTTAAAATCAGGCAGTGGGGACTCTTCTGAGCTACCTGGACATGGAGGTCAATATGGATGGCGATCTGTTGCTAATGACAAACACTATTCAAACCGTAAAACTTCTCAGCAACTGAAATCAAATTCAAAAAAACGCTCAGCTCATGGTGTCAAAGTTTTTCACTCACAACCTGCGCTGAAGCTGCAGACAATGAAATTGAAGTTGAGCAATAAAGATATTGCAAATTTTCATCGGCCTAAAGCATTATGGTATCCCCATGACAATGAGGTGGCTGTCAAAGAACAAGGGAAATTGCCAACACAAGGACCCATGAAAATTATTATGAAGAGCTTGGGTGGCAAGGGGAGTAAATTGCATGTTGATGCTGAAGAAACTCTCTCTTCTGTTAAAGCAAAAGCTTCCAAAAAGCTAGATTTCAAGGCATCAGAAACAGTGAAAATATTTTATTTAGGAAGGGAACTTGAAGATCAAAAATCACTTGCTGTGCAAAATGTTCAACCCAACTCCTTGTTACATCTTGTCCGTACAAAGATACATTTGTGGCCAAGGGCACAAAGGGTTCCTGGTGAGAATAAGTCTTTGCGCCCTCCAGGGGCATTCAAGAAAAAGTCTGATCTGTCTGTGAAAGACGGACATGTTTTTCTGATGGAATATTGTGAAGAAAGGCCTTTACTCTTGAGCAATGTTGGAATGGGTGCAAGACTCTGTACATACTATCCAAAATGTTCACCAGATGACCAATCTGGCTCCTTATTACGCAACACGGATAGTACCTTGGGGCACATTATTTCTCTGGATCCTGCTGATAAATCTCCTTTCCTTGGAGACTTGAAACCCGGTTGCAGTCAGTCATCACTTGAGACAAATATGTATAGAGCACCTATATTTCCTCATAAAGTTCCATTAACTGACTACCTATTGGTTCGTTCATCAAAGGGAAAGCTGTCATTAAGACGCATCGATAAAATTAATGTTGTTGGACAGCAGGAGCCTCTCATGGAGGTATTATCACCTGGAAGTAAGAATCTTCAGACTTACATGATGAACAGGCTATTGGTACACATGTGCCGTGAATTCCAAGCAGCGGAGAAGCGGAACTTGCCTCCATACATTCGTATTGATGAGTTTCTGTCACAGTTTCCTTACCTGTCAGAAGCCTCATTCCGTAAGAGAATCAAGGAATATGCCAATTTGCAGAGGGGAGCTAGTGGACAGTCAATTTTGGTTAAAAAGCGAAATTTTCGCATGTGGTCAGAGGATGAATTGAGAAAAATGGTGACACCAGAGCTTGTTTGTGCCTATGAAAGCATGCAAGCTGGCCTTTACCGTCTAAAACATTTAGGAATAACTGAAACACATCCTACTAATATTTCATCTGCAATGAGTCGGCTTCCTGATGAAGCAATAGCACTGGCTGCTGCATCACACATCGAGAGGGAGCTGCAAATTACTCCTTGGAACTTGAGTAGCAATTTTGTTGCCTGTACAAGCCAGGGTAAGGAAAATATTGAACGAATGGAAATTACTGGTGTTGGTGATCCATCTGGTCGTGGCATGGGTTTTAGCTATGCTCGGGCACCTCCAAAGGCACCAGTCTCTAGTGCAGTAGTAAAGAAAAAAGCAGCTGCTAGCCGGGGAGGTTCCACTGTTACTGGTACTGATGCTGATCTACGTAGATTAAGCATGGAGGCTGCACGGGAGGTTCTTCTTAAGTTCAATGTTCCAGAGGAAGTCATTGCAAAACAAACTAGGTGGCATCGCATTGCTATGATACGCAAACTTTCAAGTGAGCAAGCTGCATCTGGGGTTAAGGTTGATCCAACAACTATCAGCAAATATGCCCGTGGCCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACCAGAGAGAAGTGCCAGGAGATTTGGGACAGACAAGTTCAGAGTCTGACAGCTGTAAATGGTGATGAAAATGAGAGTGATTCAGAAGGAAATAGTGATCTAGATTCTTTTGCTGGAGATCTGGAAAATTTACTTGATGCTGAGGAGTTTGAAGAGGGAGAAGAGGGTACCAATGACTTAAAACATGAAAAGGGAGATGGTGTTAAGGGTCTTAAAATGAGAAGACGCTCAACTTTAGCCCAGGCAGAGGAAGAAATAGAAGATGAAGCAGCTGAGGCTGCAGAATTATGCAGGTTGCTTATGGATGATGATGAAGCTGACAGGAAGAAAAAGAAGAAAGCTAGGGTTGTGGTAGAAGAAGCAAGACTGATACCAAAGCTGCAATCAAAATTTGTCTTTGACAACACGGAACAAGTTAAGCAAATGCCAAATGCGTTGCATCTAGATGGAACTAATCATTTTAGAGAGGATGCAATTACAGATCTTAGGGAGGAGGACAATTTTCCTGCAAAAAAAAGCAAATCAGCAAAGGTCAATAAAGCAAAGAAGAATGACATTACACCTATTAGTCTACCAAATAAAAAAATCAAATTGAATATGGGAGAAGGAATCAAGGCCCAGGTATTTAAGGAGAAAAAACCATCAAGGGAAACTTTTGTTTGTGGAGCATGTGGCCAGCTTGGGCACATGCGAACAAACAAGAACTGTCCAAAATATGGCGAAGATCTGGAAGCACCACTTGAATCTATAGATATGGAGAAATCATCTGGAAAATCCGGCTTTGCTGATCCTTCTGGTCAGTCCCAGCAGAAAGTCCCCTCCAAAAAGTCAACATCAAAAAGCACAACAAAAGTTGCTCCAGTTGTTGACAATTCAGCGAAAATTCCTTTGAAATTCAAATGCAGCTCCACAGAGAAATCTTCTGATAAACCTGCAATAGAAATCCTGCAGAGTTCTGACAAGCCAGTCACTTCTGACTCAGAAACTGCTAAATCCGCTAAGGTTAATAAGATAACTATTCCCAAAAAAATGAAACCAGATGATACACAGGCTGAATCTATTAAGCATGCTATTGTTATACGGCATCCTAGTGATTCAGGTAGAGTTCAGGTTGATTCTCACAAGCTCCCAATTAAAATACGCCCGCCTATGGAAATAGATAGGGAGCAAAGTCACAAAAAGATTATTATAAGGCGTACAAAGGAGGTTGCTGATCTGGAACTGGACAGCCCTGGTGGTAACACAGGACTTGAACACAGAAAAACTAAAAGAATTGTTGAATTGTCGAATTTTGAAAAGCACAGAAAGCAGGAGACCATGTATTCAACTGAAGGTTTGGTGAAATGGAAAGCTAAAGAAGATAGAAGATGGTGGGAAGAGCAAGAGAAACGGAGAAATGAAGCGAGAATCAGAGAAGACAGAGCAAGGAGGCATCACAAAGAAGAAATCAGGATTCTCAAAGAGCAGGAAAGGTTAGATGAAATAAAAAGATATGAAGAAGATATTAGAAGAGAGAGGGAGGAGGAAGAACGCCAAAAAGCTAAGAAGAAAAAGAAAAAGAAAAAGCCTGACATAAGAGAAGAGATTTTAGATGACCCCAGAACAAGAAGATATGATAAGAGGATGCCGGAAAGAGACCGAAGTGGAAAAAGGAGATCTGTTGTTGAGTTAGGAAAGATTGGTACAGATTATACGCCGCCAACAAAACGCCGAAGAGGGGGAGGGGGGGAGGTTGGTCTGGCAAATATCTTGGAGAGCATCGTGGACACCATTGTGAAAGATAGGATTGATCTGTCCTATCTTTTCCTGAAACCAGTGTCCAAGAAAGAGGCTCCTGACTACCTGGACGTTATAGAGAGGCCTATGGATCTTTCCAGAATCAGAGAGAGGGTACGGAATATGGAGTACAAGAGCCGAGAAGATTTCAGACACGATATGTGGCAGATCACTTATAATGCCCATAAATATAACGATGGGCGAAATCCTGGAATTCCTCCACTTGCAGATATGCTTTTAGAATATTGTGATTATTTGTTGAATGAGAATGACGATAGCCTCACTGCTGCAGAAGCTGGTATTGAAGTTAGAGATTTCTAG 5685 0.4176 MGYDSDSPSQDGRDEDDEEEYEESGKGNRFLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGSSLTDIDLSGKSPQTQPDVVEQDCGEKAEDAVDYEDIDEEYDGPETETANEEEYLLPKKEFFSAEVSLEALESRASVFDDENYDEESDKEQDVVNNDSKVDNISLAGVQEESFVGASKVESALEHDLQAGSLQSEELDTDAQKLEEEGPEVLKKSTAAPLPVLYVEDGMAVLRFSEIFGIHEPLRKGEKREHRHSTPGDRYKSLDLSDDIVEEDEEGFLKGFSQSLSLTKQVCVVSNDVSESNDVDLEFPKFGFLHGDASMALKDDRLPKDSCLCAEPMKGDFTEDLPWKDHPFTWANFYPLDQRDWEHEILWGDSPVASDNNVESCEISGPELGASGGSEREIESGIHNLRLESKKILDEKDHTVFMCCSPVSLEPFGSRDSSGSKTNLMSRSLFHPQLLRLESRYEVDGSSLADGRGEDISETEKHKQSDQVKRFTKVMSQNRDLMEGSWLDKIIWEELDQPTMKPKLIFDLRDDQMHFEVLDKKDGTHLRLHAGAMILTHSLKSGSGDSSELPGHGGQYGWRSVANDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPKALWYPHDNEVAVKEQGKLPTQGPMKIIMKSLGGKGSKLHVDAEETLSSVKAKASKKLDFKASETVKIFYLGRELEDQKSLAVQNVQPNSLLHLVRTKIHLWPRAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNVGMGARLCTYYPKCSPDDQSGSLLRNTDSTLGHIISLDPADKSPFLGDLKPGCSQSSLETNMYRAPIFPHKVPLTDYLLVRSSKGKLSLRRIDKINVVGQQEPLMEVLSPGSKNLQTYMMNRLLVHMCREFQAAEKRNLPPYIRIDEFLSQFPYLSEASFRKRIKEYANLQRGASGQSILVKKRNFRMWSEDELRKMVTPELVCAYESMQAGLYRLKHLGITETHPTNISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERMEITGVGDPSGRGMGFSYARAPPKAPVSSAVVKKKAAASRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLTAVNGDENESDSEGNSDLDSFAGDLENLLDAEEFEEGEEGTNDLKHEKGDGVKGLKMRRRSTLAQAEEEIEDEAAEAAELCRLLMDDDEADRKKKKKARVVVEEARLIPKLQSKFVFDNTEQVKQMPNALHLDGTNHFREDAITDLREEDNFPAKKSKSAKVNKAKKNDITPISLPNKKIKLNMGEGIKAQVFKEKKPSRETFVCGACGQLGHMRTNKNCPKYGEDLEAPLESIDMEKSSGKSGFADPSGQSQQKVPSKKSTSKSTTKVAPVVDNSAKIPLKFKCSSTEKSSDKPAIEILQSSDKPVTSDSETAKSAKVNKITIPKKMKPDDTQAESIKHAIVIRHPSDSGRVQVDSHKLPIKIRPPMEIDREQSHKKIIIRRTKEVADLELDSPGGNTGLEHRKTKRIVELSNFEKHRKQETMYSTEGLVKWKAKEDRRWWEEQEKRRNEARIREDRARRHHKEEIRILKEQERLDEIKRYEEDIRREREEEERQKAKKKKKKKKPDIREEILDDPRTRRYDKRMPERDRSGKRRSVVELGKIGTDYTPPTKRRRGGGGEVGLANILESIVDTIVKDRIDLSYLFLKPVSKKEAPDYLDVIERPMDLSRIRERVRNMEYKSREDFRHDMWQITYNAHKYNDGRNPGIPPLADMLLEYCDYLLNENDDSLTAAEAGIEVRDF. 1895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01210 1894 MobiDBLite consensus disorder prediction 1700 1747 - -
Seca10g01210 1894 MobiDBLite consensus disorder prediction 93 114 - -
Seca10g01210 1894 Pfam Ubiquitin family 677 745 IPR000626 GO:0005515
Seca10g01210 1894 Pfam Bromodomain 1781 1856 IPR001487 GO:0005515
Seca10g01210 1894 MobiDBLite consensus disorder prediction 1495 1547 - -
Seca10g01210 1894 SUPERFAMILY TAF(II)230 TBP-binding fragment 24 62 IPR036741 -
Seca10g01210 1894 Coils Coil 1268 1295 - -
Seca10g01210 1894 Gene3D - 22 71 IPR036741 -
Seca10g01210 1894 MobiDBLite consensus disorder prediction 70 84 - -
Seca10g01210 1894 Pfam TATA box-binding protein binding 18 65 IPR009067 -
Seca10g01210 1894 Gene3D - 655 745 - -
Seca10g01210 1894 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 13 1892 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Seca10g01210 1894 MobiDBLite consensus disorder prediction 477 498 - -
Seca10g01210 1894 Coils Coil 192 212 - -
Seca10g01210 1894 ProSiteProfiles Bromodomain profile. 1790 1860 IPR001487 GO:0005515
Seca10g01210 1894 PRINTS Bromodomain signature 1807 1823 IPR001487 GO:0005515
Seca10g01210 1894 PRINTS Bromodomain signature 1841 1860 IPR001487 GO:0005515
Seca10g01210 1894 PRINTS Bromodomain signature 1823 1841 IPR001487 GO:0005515
Seca10g01210 1894 PRINTS Bromodomain signature 1793 1806 IPR001487 GO:0005515
Seca10g01210 1894 ProSitePatterns Bromodomain signature. 1795 1852 IPR018359 -
Seca10g01210 1894 MobiDBLite consensus disorder prediction 1495 1530 - -
Seca10g01210 1894 FunFam Transcription initiation factor TFIID subunit 1 655 745 - -
Seca10g01210 1894 Pfam Protein of unknown function (DUF3591) 592 1159 IPR022591 -
Seca10g01210 1894 CDD Ubl_TAFs_like 673 744 - -
Seca10g01210 1894 SUPERFAMILY Ubiquitin-like 643 743 IPR029071 -
Seca10g01210 1894 SMART ubq_7 673 745 IPR000626 GO:0005515
Seca10g01210 1894 SUPERFAMILY Bromodomain 1760 1880 IPR036427 GO:0005515
Seca10g01210 1894 ProSiteProfiles Ubiquitin domain profile. 673 743 IPR000626 GO:0005515
Seca10g01210 1894 Pfam Zinc knuckle 1417 1437 IPR041670 -
Seca10g01210 1894 MobiDBLite consensus disorder prediction 1456 1483 - -
Seca10g01210 1894 MobiDBLite consensus disorder prediction 1 31 - -
Seca10g01210 1894 Gene3D - 1774 1887 IPR036427 GO:0005515
Seca10g01210 1894 MobiDBLite consensus disorder prediction 1719 1747 - -
Seca10g01210 1894 SMART bromo_6 1769 1880 IPR001487 GO:0005515
Seca10g01210 1894 CDD Bromodomain 1779 1875 - -
Seca10g01210 1894 MobiDBLite consensus disorder prediction 68 116 - -
Seca10g01210 1894 Coils Coil 1684 1718 - -
Seca10g01210 1894 MobiDBLite consensus disorder prediction 599 619 - -
Seca10g01210 1894 MobiDBLite consensus disorder prediction 1449 1483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01210 Seca-Chr10 11920454 11943360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01210 673 743 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.028 2.48e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01210 K03125 - gmx:100780733 3142.83