Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01209 ATGTCCCTCCTCAGCAGATTCTTCTACAAGAGACCCCCAGATGGCTTGCTCGAATTCGTCGACAGAGTATACGTCTTTGATTCTTGCTTCTCCACCGAAGCATTACCCGACGGAATGTACCAGCTTTACCTTCACGAAATCGTCACTGAGTTGCACGAAGAGTTTCCAGAATCTTCCTTTCTGGCCTTCAATTTTCGCGACGGCGAGAAGCGTAGCAACTTGGCGGAGATCCTATGCGAGTACGATGTTATGGTGATGGATTATCCGAAGCAGTATGAGGGTTGCCCCCTTCTGCCACTGTCTCTGGTTCAGCATTTTCTTCGCGTTTGCGAGAGTTGGCTTTCACTTGGGAATCATCAAAACGTGATATTGTTCCACTGTGAGAGAGGGGGTTGGCCCTTATTGGCGTTCCTTCTCGCTAGCTTTCTGATTTTCAGAAGGGTACACAGTGGTGAACGCAGGACCCTTGAAATTGTGCATAGAGAAGCACCTAAGGGTTTGTTGCAGCTCTTGTCACCCTTGAATCCTTTGCCTTCTCAGCTTCGTTATATTCAGTATGTGGCAAGGAGGAACATTGCCCCTGAGTGGCCCCCACCTGAGCGGGCTCTGTCTCTGGATTGTGTCATTCTCAGAGGAATTCCTAGTTTTGATTCCCAGAATGGATGCAGGCCCATGTTCAGGATTTTTGGGAGGAATCTGCTCACAAAGGGTGGGCTTTCCACCCAGATGATTTATTCCATGCACAAGAAGAAGAAGATCTTGAGGCATTACCGCCAGGCGGATTGTGATGTGATTAAGATTGATATTCAATGTTTAGTGCAAGGAGATGTGGTGTTGGAGTGTGTCCATTTGGATTTGGATCCAGAAAGGGAAGTCATGATGTTTCGTGTGATGTTTAACACTGCATTTATTCGATCCAACATACTGATGCTGAACACTGAAAATTTGGACATTCTTTGGGATTCAAAGGAGCGGTATCCAAAAGGATTCCGGGCTGAGGTTTTGTTTGGGGAGGTTGAAACCATAAGTCCCCCAAGGGCTCCAACAACTATTTTAAATGGTGAGGAGAAAGGTGGATTGCCCATTGAAGCATTTTCAAGAGTTCAAGAACTTTTTAGTGGTGTAGAATGGGTTGACAGTGGTGATGCTGCTGCTTGGCTGCTTAAACAACTTACAGTCTTAAATGATGCAAAAGAGTTTTCAAGGTTGCAAGGTAAAGGAAGCTGGTATTCATCACCTGCTGACTCTGACGATGAAAATAATGAATCAAGCACTGCTGATAGTTCAGATGAGGCCTTTGATGTTATTCCCAAGTTTTCTACTGATCCTTCGAAATTATTGACATCTGACACTCCCTATTCAATCCATTTAGCTTTTGAGGATAATGGTGGAAATAACACAAATCTCACTTCAAGAACACCTGATCAGTCATTAACTGATAATGTTTCACCACCTCATCATGCTCCAAGTAAGGAATATTCTCCCTGTTCATCTCCACCATCACCAGTTTCTGCTACTCAACCTCTGCTTCTGACACCAACACCTCCTCCAACAATGTCTAATAAAGGGGGGCCTTTAGCTGCACCGCCACCACCCCCACCTCCCCCTCCCCCTCCTTCTCTAGGTTTTTCCACTAGCAATGCTACTAGTCCACCTCCACCTCCACCACCTCCCATGAGTCACAATGCTAGCAATGCTTCTTCATTGCTTTCACCTCCACCACCACCACCACCACCACCACCACCTCCTCCTCCTCCTACTATAGGTCATAGTGCCAATAGTGCTCCTAGTCCTCCTCCTCCACCTCCACCTCCTCTAGGTCCTGTAAGAACAGGTTCAGCCCCGCCACCACCACCTCCTCCTCCTCCTCCTCCTCCAGGACCTGTACGAACAAGTTCAGCCCCACCACCCCCACCTCCACCACCTCCAGGACCTGTAAGAACAGGTTCGGCCCCACCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCTCCAGGACCTGTACGAACAAGTTCAGTCCCACCACCCCCACCTCCACCTCCTCCAGGTTCTGTAAGAACAGGTTCAGCCCCACCACCACCACCTCCACCTCCTCCAGGTCCTGCACGAACAGGTTCAGCTCCACCACCACCACCACCACCACCTCCACCTCCTCCCGGTCCTGCACGAACAGGTTCAGCTCCACCCCCACCCCCTCCCCCTCCTCCAGGTCCTATACGAACAGGTCCAGCGACGCCACCTCCACCTCCACCTCCTCCAGGTCCTACTCGAACAGGTTCAGTCCCACCACCTCCACCTCCTCCAGGTGTACGAACAGGTCCAACTCCCCCACCTCCCCCACCAGCTCCTCCAGGATCTGTGCGATTGGGTTCAGCTCCACCGGCACCAAAGCCTCCAAGCGCTCCTCCTCCTCCACCTGGTCGTGGTTTATCATCAGTGCCACCTCCACCTACTGCAGCCAGGGCCCCTGGTGTGCCACCACCACCAGGCAAAGCTTCAGCAACAACAAATGTTGGAAGAGGTCGTGGTACTGCTGGGGTTGCTAACGCTCCTAAGAAAACTTTGTTGAAGCCTCTTCATTGGGTGAAAGTTGCTCGAGCAACAAAAGGGAGTCTGTGGGCTGATTCACAGAAACAAGACAGTGAATCAAGGGCCCCTGAAATAGATATTTCAGAACTTGAGAGCTTGTTTTCAGCAGCATCTGCTTCTGATGGGAGCAGTACTAAAGGGGGAGGTCGACGTGGTACTAATATTAACAAACCTGAGAAAGTACAATTGGTTGACTTGCGTAGAGCATATAATTGTGAAATAATGCTCTCTAAAATCAAAATTCCTTTGCCAGATATGCTTAATGCAGTTCTGGCATTGGATTCTTCTGTTCTGGATATTGATCAGGTTGAAAATCTCATCAAGTTCTGTCCCACAAAGGAAGAGATGGAGATGTTGAAGAATTATTCAGGGAACAAGGAAATGCTTGGAAGGTGTGAGCAGTTTTTTATGGAGCTGATGAAGGTTCCACGAGTAGAATCCAAATTAAGGGTGTTTGCTTTTAAAATCACCTTTTCTGCTCAGGTGAGCGATTTAAGGTTGAATTTGAATACAATCAATGATGCAGCCAGAGAGGTGAAAGAATCTGTAAAATTGCGTCAAATAATGCAGACTATTCTTACTTTGGGCAATGCCTTGAATCAGGGAACGGCACGGGGATCAGCAGTAGGGTTCAAATTGGATAGCCTTCTTAAATTATCTGATACTCGTGCTAGAAATAACAAAATGACTTTAATGCATTATTTGTGTAAGCTTCTTGCTGAGAAATTGCCAGAATTGCTAGATTTTGACAAGGATCTTGTCCATTTGGAAGCAGCTTCTAAGATCCAACTAAAAGCATTAGCTGAAGAAATGCAAGCTGTGAGTAAAGGTTTAGAGAAAGTTGAGCAAGAACTCACTGCTTCTGAAAATGATGGTACTATATCTTTAGGATTTCGCAAGGTAAGGAATAAAGAATGTAATGTTTCTCTTGCTCAGGTGTTGAAGAATTTTCTTGATATTGCCGAAGCTGATGTGAGGTCACTTATATCGTTGTATTCTGAAGTGGGAAGAAATGCAGATTCTTTGTCGCAGTACTTTGGGGAGGATCCAGCTAGGTGCCCCTTTGAACAAGTGACACAAATACTTGTTGTCTTTGTTAAGATGTTCAACAAGTCAAGGGAGGAGAATGAAAGGCTAGCAGATGCTGAAAAAAAGAAATTAGAGAAAGAAGCCATGAAGGAGAAGACAGCAAATAACATGCATTCCAAAAGAGATATTGTTCGGTAG 3825 0.4706 MSLLSRFFYKRPPDGLLEFVDRVYVFDSCFSTEALPDGMYQLYLHEIVTELHEEFPESSFLAFNFRDGEKRSNLAEILCEYDVMVMDYPKQYEGCPLLPLSLVQHFLRVCESWLSLGNHQNVILFHCERGGWPLLAFLLASFLIFRRVHSGERRTLEIVHREAPKGLLQLLSPLNPLPSQLRYIQYVARRNIAPEWPPPERALSLDCVILRGIPSFDSQNGCRPMFRIFGRNLLTKGGLSTQMIYSMHKKKKILRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNTENLDILWDSKERYPKGFRAEVLFGEVETISPPRAPTTILNGEEKGGLPIEAFSRVQELFSGVEWVDSGDAAAWLLKQLTVLNDAKEFSRLQGKGSWYSSPADSDDENNESSTADSSDEAFDVIPKFSTDPSKLLTSDTPYSIHLAFEDNGGNNTNLTSRTPDQSLTDNVSPPHHAPSKEYSPCSSPPSPVSATQPLLLTPTPPPTMSNKGGPLAAPPPPPPPPPPPSLGFSTSNATSPPPPPPPPMSHNASNASSLLSPPPPPPPPPPPPPPPTIGHSANSAPSPPPPPPPPLGPVRTGSAPPPPPPPPPPPPGPVRTSSAPPPPPPPPPGPVRTGSAPPPPPPPPPPPPPPPPPGPVRTSSVPPPPPPPPPGSVRTGSAPPPPPPPPPGPARTGSAPPPPPPPPPPPPGPARTGSAPPPPPPPPPGPIRTGPATPPPPPPPPGPTRTGSVPPPPPPPGVRTGPTPPPPPPAPPGSVRLGSAPPAPKPPSAPPPPPGRGLSSVPPPPTAARAPGVPPPPGKASATTNVGRGRGTAGVANAPKKTLLKPLHWVKVARATKGSLWADSQKQDSESRAPEIDISELESLFSAASASDGSSTKGGGRRGTNINKPEKVQLVDLRRAYNCEIMLSKIKIPLPDMLNAVLALDSSVLDIDQVENLIKFCPTKEEMEMLKNYSGNKEMLGRCEQFFMELMKVPRVESKLRVFAFKITFSAQVSDLRLNLNTINDAAREVKESVKLRQIMQTILTLGNALNQGTARGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKLPELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELTASENDGTISLGFRKVRNKECNVSLAQVLKNFLDIAEADVRSLISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILVVFVKMFNKSREENERLADAEKKKLEKEAMKEKTANNMHSKRDIVR. 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01209 1274 ProSiteProfiles Formin homology-2 (FH2) domain profile. 849 1261 IPR015425 -
Seca10g01209 1274 Coils Coil 1130 1157 - -
Seca10g01209 1274 MobiDBLite consensus disorder prediction 1243 1274 - -
Seca10g01209 1274 Coils Coil 1236 1265 - -
Seca10g01209 1274 SMART it6_source 528 1274 IPR015425 -
Seca10g01209 1274 MobiDBLite consensus disorder prediction 902 922 - -
Seca10g01209 1274 MobiDBLite consensus disorder prediction 569 833 - -
Seca10g01209 1274 MobiDBLite consensus disorder prediction 458 854 - -
Seca10g01209 1274 MobiDBLite consensus disorder prediction 902 917 - -
Seca10g01209 1274 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Seca10g01209 1274 SUPERFAMILY Formin homology 2 domain (FH2 domain) 924 1265 - -
Seca10g01209 1274 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Seca10g01209 1274 MobiDBLite consensus disorder prediction 460 484 - -
Seca10g01209 1274 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 187 IPR029021 -
Seca10g01209 1274 FunFam Formin-like protein 849 1247 - -
Seca10g01209 1274 Gene3D - 197 342 - -
Seca10g01209 1274 PANTHER FORMIN-J 750 1264 - -
Seca10g01209 1274 SMART PTEN_C2_2 198 977 IPR014020 -
Seca10g01209 1274 MobiDBLite consensus disorder prediction 509 561 - -
Seca10g01209 1274 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 339 IPR035892 -
Seca10g01209 1274 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
Seca10g01209 1274 MobiDBLite consensus disorder prediction 405 419 - -
Seca10g01209 1274 Pfam Formin Homology 2 Domain 854 1236 IPR015425 -
Seca10g01209 1274 Gene3D Formin, FH2 domain 850 1246 IPR042201 -
Seca10g01209 1274 MobiDBLite consensus disorder prediction 405 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01209 Seca-Chr10 11907148 11918400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01209 1 438 FH2 protein (formin) Gene Family AT1G31810 78.360 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01209 - - adu:107487096 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01209 10 11907148 11918400 Seca10g01209 10 11907148 11918400 ECH