Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01200 ATGTCCAAGGTGCTTCCACTTCCAATTTCTCTTTTATGGTCGCTAAGTTTTTTCAAATCACGCCTCGTTCCAACGTATCAAATAAGTGCCTTAATTGACAGGCAAGAGAAGTTGTATGAGAGAAAATCTGAATTGAGTGCTATTCTGGAAGCGTGTAAAGAATCTGAAAACCAGGCCAATGATGTGGCTCCAAGCACTGTGGAAAATTGGACTGGGCCATTTGAATGGGATTCTGAAGCAGACGATATTAGGTTGAATATTTTTGGCATTTCATCTTACCGTGCAAATCAAAGAGAGATAATTAATGCCATCATGAGTGGAAGAGATGTTTTGGTGATTATGGCTGCAGGTGGTGGCAAGAGCCTCTGCTACCAGCTTCCTGCTGTTCTTCGTGATGGAATTGCTCTAGTTGTCAGTCCTTTGCTTTCGTTAATTCAAGATCAGGTGATGGGTTTGACTGCTTTGGGCATCCCAGCATATATGTTAACTTCGACAACAAATAAGGATAATGAGAAATTTATATACAAGGCTTTGGAGAAGGGTGAGGGGGAACTCAAAATATTGTATGTGACTCCAGAAAAGATATCAAAAAGCAAGAGGTTTATGTCAAAACTTGAGAAATGCCATCATGCTGGTCGTCTCTCTCTAATTTCAATTGATGAGGCACATTGCTGTAGTCAGTGGGGTCATGATTTTCGACCTGATTACAAAAACCTTGGCATTCTCAAGACTCAGTTCCCTAATGTTCCAATGGTTGCTTTGACTGCAACTGCTACTCAGAGGGTCCAAAATGATCTGATAGAGATGTTGCGTATTCCTAGATGTGTCAAATTTGTCAGCACTGTCAACAGGCCAAACTTGTTTTATATGGTAAAGGAAAAGTCATCTGTCAGTAAGGTAGTTATTGATGAAATTGCTGAATTCATTCAAGAATCTTATCCAAATAAAGAATCAGGGATTGTTTATTGCTTCTCGAGGAAGGAATGTGAACAGGTTGCAAAGGATTTAAGGGAGAGAGGAATTTCAGCTGATTATTATCATGCAGATATGGATGTACATGCTCGGGAAAAAGTACATATGCGGTGGAGCAATAACAAGCTTCAGGTCATAGTTGGTACAGTAGCTTTTGGTATGGGAATCAACAAACCAGATGTCAGGTTCGTCATCCATCACAGCTTGAGTAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCTGGCCGAGATGGACTTCCTTCTGAATGCCTATTATATTTCAGACCTGGTGATGTTCCCCGGCAGAGTTCAATGGTCTTCTACGAAAATTCGGGACTGCAGAATCTCTATGACATAGTACGATATTGTCAGTCCAAAAGACAATGCCGACGAAGTGCCTTTTTCCGGCATTTTGCTGAGCCACTACAAGAGTGCAATGGGATGTGTGACATCTGTGCATTCTCAAGTGAGGTGAAGGAAGTGGATGTCTCCCGTCATGCAAAACTGATGGTCTCCTTGTTGCAAGATATGCAAGCAAACGATCAGAGGGCAACGATGTTGCAATTATTCGATAAAATGAAAATAAAACAGAAGGAACTAGGTTCTGACTTAAAAAGAGAGGAAATTGAGCAGCTCATCTTACAACTTTTACTGGAGCGTGCTTTGGTAATAGATTTTTTCCTTAATATTGAAAGTTAG 1677 0.4073 MSKVLPLPISLLWSLSFFKSRLVPTYQISALIDRQEKLYERKSELSAILEACKESENQANDVAPSTVENWTGPFEWDSEADDIRLNIFGISSYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTTNKDNEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPMVALTATATQRVQNDLIEMLRIPRCVKFVSTVNRPNLFYMVKEKSSVSKVVIDEIAEFIQESYPNKESGIVYCFSRKECEQVAKDLRERGISADYYHADMDVHAREKVHMRWSNNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRSAFFRHFAEPLQECNGMCDICAFSSEVKEVDVSRHAKLMVSLLQDMQANDQRATMLQLFDKMKIKQKELGSDLKREEIEQLILQLLLERALVIDFFLNIES. 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01200 558 SMART helicmild6 330 411 IPR001650 -
Seca10g01200 558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 427 IPR027417 -
Seca10g01200 558 PANTHER DNA HELICASE RECQ FAMILY MEMBER 72 543 - -
Seca10g01200 558 Pfam Helicase conserved C-terminal domain 305 410 IPR001650 -
Seca10g01200 558 Pfam RecQ zinc-binding 423 479 IPR032284 -
Seca10g01200 558 Gene3D - 284 480 IPR027417 -
Seca10g01200 558 Gene3D - 484 557 IPR036388 -
Seca10g01200 558 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 101 276 IPR014001 -
Seca10g01200 558 CDD SF2_C_RecQ 284 420 - -
Seca10g01200 558 FunFam ATP-dependent DNA helicase 50 283 - -
Seca10g01200 558 Gene3D - 50 283 IPR027417 -
Seca10g01200 558 NCBIfam RecQ family ATP-dependent DNA helicase 86 509 IPR004589 GO:0004386|GO:0006310
Seca10g01200 558 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 301 450 IPR001650 -
Seca10g01200 558 FunFam ATP-dependent DNA helicase 284 480 - -
Seca10g01200 558 CDD DEXHc_RecQ1 75 283 - -
Seca10g01200 558 Pfam DEAD/DEAH box helicase 95 263 IPR011545 GO:0003676|GO:0005524
Seca10g01200 558 SMART ultradead3 89 292 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01200 Seca-Chr10 11775235 11786492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01200 88 425 Eukaryotic Initiation Factors Gene Family AT3G19760 19.263 3.42e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01200 K10899 - gmx:100817635 944.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01200 10 11775235 11786492 Seca10g01200 10 11775235 11786492 ECH