Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01197 ATGTTCGGTGGTGGAGGAGACGATGCACTGGCGGCTCGCCTCGGCATGGTGCCGCCGTCAATGCTGAATCCTGCGACATCGTCGGTGATCTCTGGCGAGTTGTCACCGGCGCCGGCGAGGGAGGAGAGGGGCCCGACTCAGCCGCAGTGGAGCCAGCAGGAGACGAGAGAGTTCATAGCGATCCGCGCGGAGCTGGAGAGAGACTTCACTGCGTCGAAGAGGAACAAGACGCTTTGGGAGGTGGTGAGCTCCAAGATGAAGGAGAGAGGGTTCAGGAGGAGCCCCGAACAATGCAAATGCAAGTGGAAGAACCTCGTTAATCGCTATAAGGGAAAAGAGACATCTGATCCTGAGCATGGCAAGCAATGCCCGTTTTTTGAAGAATTGCATGCAGTCTTTACCCAAAGGGCACATAACATGCAACGGTTGCTTCTTGAATCTGAAACCCGTTCAACTCAAACAAAGAAAGGGGTGAAAAGATTAAGTGGAGATCGATCCTCAGAGGAATTCTCAGAAGATGATGATGACGTTGAAGATGACAGTGAAGAGGAGAGACCTGCCAGAAGCAATACACGCAAAAGGAAAGCTGAAAAAATTACAACTGAGAAGTCTTCAAGGGTAAACAATCCATGTAATAATACTAGTAGTATTCAGGAAATGCTCAAGGAGTTTTTCCAACACCAGCTAAGGATGGAGATGCAGTGGAGGGAGATGATGGAAAGGCGTGCTCATGAAAGGCAGCTGTTTGAGCAGGAATGGCGGCAGTCAATGGAAAAGCTTGAGAGGGAGAGATTAATGATTGAACAGGCTTGGAGGGAGAGAGAAGAACAGAGGAGAATGAGAGAAGAGAGTAGGGCAGAGAGGAGGGATGCTTTGTTGACGACCCTTTTAAACAAACTCATTCATGAATCTAACTAA 918 0.4924 MFGGGGDDALAARLGMVPPSMLNPATSSVISGELSPAPAREERGPTQPQWSQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMKERGFRRSPEQCKCKWKNLVNRYKGKETSDPEHGKQCPFFEELHAVFTQRAHNMQRLLLESETRSTQTKKGVKRLSGDRSSEEFSEDDDDVEDDSEEERPARSNTRKRKAEKITTEKSSRVNNPCNNTSSIQEMLKEFFQHQLRMEMQWREMMERRAHERQLFEQEWRQSMEKLERERLMIEQAWREREEQRRMREESRAERRDALLTTLLNKLIHESN. 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01197 305 Coils Coil 250 270 - -
Seca10g01197 305 Pfam Myb/SANT-like DNA-binding domain 48 131 IPR044822 -
Seca10g01197 305 CDD GT1 48 113 - -
Seca10g01197 305 MobiDBLite consensus disorder prediction 152 167 - -
Seca10g01197 305 MobiDBLite consensus disorder prediction 145 213 - -
Seca10g01197 305 MobiDBLite consensus disorder prediction 21 54 - -
Seca10g01197 305 MobiDBLite consensus disorder prediction 168 182 - -
Seca10g01197 305 FunFam Zinc finger and SCAN domain-containing 20 50 111 - -
Seca10g01197 305 SMART sant 46 108 IPR001005 -
Seca10g01197 305 MobiDBLite consensus disorder prediction 183 202 - -
Seca10g01197 305 ProSiteProfiles Myb-like domain profile. 50 106 IPR001005 -
Seca10g01197 305 PANTHER FI21293P1 42 302 - -
Seca10g01197 305 Gene3D - 50 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01197 Seca-Chr10 11738289 11741157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01197 44 305 Trihelix Transcription Factor Family AT2G38250 44.737 9.20e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca10g01197 Myb_DNA-bind_4 2e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01197 - - gmx:100812635 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01197 10 11738289 11741157 Seca10g01197 10 11738289 11741157 ECH