Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01194 ATGGGCATTTGTCTGATAAAATGGCAATGGCTGTGGCTTCTTTATGCTCTGCTGATACATATTATAATTGATAAAAGTGAAGGGATCAGTCCTGATGGCGAGGTACTTCTCAGTTTCAGGACAGCAGTTGTTAGTTCTGATGGTATCCTGTTACAATGGAGGCCAGAGGATCCTGACCCATGTAAATGGAAAGGAGTGAAATGTGATCCGAAGACCAAGAGAGTAACACATCTGAGTCTATCTCACCATAAGTTAAGTGGGTCTTTGTCACCTGACCTTGGGAAGCTAGAGCATCTGAGGGTTCTTGCTCTTCATAATAACAACTTCTATGGGACGATACCATCAGAATTGGGAAATTGCACTGAATTGCAGGGAATATTTTTACAGGGTAATTACCTTAGTGGAATGATTCCAAGCGAAATAGGAAACCTGTCACAGCTTCAAAATTTGGATATATCAAGCAATTCCCTTAGTGGAAATATTCCAGCATCACTTGGGAAGTTATATAATCTCAAAAATTTCAATGTATCAACCAATTTTCTGGTCGGATCAATACCTTCTGATGGTGTCCTTGCCAAGTTTACTGGAAGCTCATTTGTTGGAAATCGTGGTTTGTGTGGATTGCAGATCAATTCAACATGTAAAGATGATGGCTCGCCTGAGACAAATAGTCGATCTACTTCCTCGGACCAAAATCAAATTGGAAAGAGGAAATATTCTGGCCGACTGCTCATCAGTGCATCAGCAACTGTTGGTGCACTACTTTTGGTGGCACTTATGTGCTTCTGGGGTTGTTTTCTTTATAAGAAATTCGGTAAAAATGACAAAATAAGTCTGGCTATGGATGTCTGTGCAGGTGCCTCAATAGTGATGTTTCATGGAGATCTACCATATACCTCGAAAGACATCATTAAGAAACTAGAGACTTTGAATGAGGAACACATAATAGGGATAGGCGGATTTGGAACCGTTTACAAGCTTGCGATGGATGATGGGAATGTATTTGCTTTGAAAAGGATTGTAAAATTAAATGAGGGCTTTGATCGTTTTTTTGAGAGGGAGCTTGAAATTCTTGGTAGCATCAAACACCGTTATCTAGTGAACTTACGGGGATATTGCAATTCACCTACATCAAAGCTGTTAATATATGACTACCTACCCGGTGGTAGTCTTGATGAAGTTCTTCATGGTAAAAGATCTGAGCAACTGGACTGGGATTCACGTTTGAATATAATCATGGGAGCTGCCAAAGGGCTTGCCTACTTGCACCATGATTGTTCCCCTAGGATCATACACCGAGACATAAAATCGAGCAATATTTTGCTTGATGGAAAATTGGATGCTCGGGTCTCTGATTTTGGACTTGCCAAACTTCTAGAGGATGAAGAATCTCACATCACCACTATTGTTGCTGGAACGTTTGGTTATCTAGCTCCAGAGTATATGCAAAGTGGCAGAGCAACTGAGAAGACTGATGTGTATAGTTTTGGTGTGCTGACACTTGAAGTGCTGAGTGGAAGACGGCCAACAGATGCATCATTCATTGAAAAGGGTCTAAATATTGTTGGTTGGTTGAATTTTCTTATTACTGAAAATAGGCCGAGGGAAATTGTTGATCCGCTATGTGAGGGGGTGCAGGTGGAGAGCCTTGATGCCTTGCTCTCTGTGGCTATTCAATGTGTTTCTTCAAGTCCAGAGGATCGACCTACTATGCACCGAGTGGTCCAGTTACTTGAATCGGAGGTCGTAACTCCGTGCCCAAGTGACTTCTATGATTCCAATTCCGACTAG 1791 0.416 MGICLIKWQWLWLLYALLIHIIIDKSEGISPDGEVLLSFRTAVVSSDGILLQWRPEDPDPCKWKGVKCDPKTKRVTHLSLSHHKLSGSLSPDLGKLEHLRVLALHNNNFYGTIPSELGNCTELQGIFLQGNYLSGMIPSEIGNLSQLQNLDISSNSLSGNIPASLGKLYNLKNFNVSTNFLVGSIPSDGVLAKFTGSSFVGNRGLCGLQINSTCKDDGSPETNSRSTSSDQNQIGKRKYSGRLLISASATVGALLLVALMCFWGCFLYKKFGKNDKISLAMDVCAGASIVMFHGDLPYTSKDIIKKLETLNEEHIIGIGGFGTVYKLAMDDGNVFALKRIVKLNEGFDRFFERELEILGSIKHRYLVNLRGYCNSPTSKLLIYDYLPGGSLDEVLHGKRSEQLDWDSRLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGKLDARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLTLEVLSGRRPTDASFIEKGLNIVGWLNFLITENRPREIVDPLCEGVQVESLDALLSVAIQCVSSSPEDRPTMHRVVQLLESEVVTPCPSDFYDSNSD. 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01194 596 ProSiteProfiles Protein kinase domain profile. 310 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01194 596 Gene3D Ribonuclease Inhibitor 30 215 IPR032675 -
Seca10g01194 596 Gene3D Transferase(Phosphotransferase) domain 1 386 584 - -
Seca10g01194 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 430 442 IPR008271 GO:0004672|GO:0006468
Seca10g01194 596 SMART serkin_6 310 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01194 596 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 29 191 - -
Seca10g01194 596 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 284 385 - -
Seca10g01194 596 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Seca10g01194 596 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 73 579 - -
Seca10g01194 596 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 386 589 - -
Seca10g01194 596 Pfam Protein kinase domain 312 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01194 596 SUPERFAMILY L domain-like 31 194 - -
Seca10g01194 596 SUPERFAMILY Protein kinase-like (PK-like) 295 578 IPR011009 -
Seca10g01194 596 ProSitePatterns Protein kinases ATP-binding region signature. 316 342 IPR017441 GO:0005524
Seca10g01194 596 Gene3D Phosphorylase Kinase; domain 1 283 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01194 Seca-Chr10 11702641 11713549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01194 1 587 Receptor kinase-like Gene Family AT2G35620 75.809 0.0 883
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Seca10g01194 Pkinase 2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01194 - - gmx:100819230 1109.75