Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01190 ATGAAACAGCCATCCAAACCATGGAGGCCCTTCACATCAAACTGCTGCTCAACTGAAGACCAAACCATCTTTAGAAACTTCAGTAGATGCAAGACCTCACGTTCAGATTTCTCCAAAAACATTGCTCCTTTACCATCATTTAGGAGGCTCTCGTTCTCTGATCTTAGCCGTTCCTCATCCACAAGAATCAATGAGGATCTTGCACAGTCTTTTGGTGCGGATTTGTTTGATTTTCAGCTGAGTGAGTTGCGTGCCATCACCCAGAATTTTTCAAGCAATTTCTTGCTGGGTGAAGGTGGGTTTGGAACAGTGCATAAGGGTTACATAGATGATAACTTGAGACTAGGCTTGAAGGCACAACCTGTTGCTGTCAAGCTTTTGGACATTGAAGGCTTACAAGGACACCGTGAATGGCTTGCAGAAGTGATTTTTCTTGGGCAGCTAAGACACCCCAATTTGGTTAAGTTGATTGGGTATTGTTGTGAAGATGAAGAACGGCTACTTGTCTACGAATTCATGCCACGAGGAAGCTTAGAGAATCACTTGTTCAGAACAGGGCTAACATCACTGCCTTGGGGAACAAGATTAAGAATTGCAATAGGTGCTGCTAAAGGCCTTTCCTTCTTGCATGGAGCTGAAAAACCAGTCATTTACAGGGACTTCAAGACCTCCAATGTCTTGCTTGATTCAGACTTCACAGCAAAATTGTCAGATTTTGGACTTGCAAAAATGGGGCCAGAGGGATCAAAGTCACACGTTACAACCAGAGTTATGGGCACTTATGGATATGCAGCCCCAGAATACATCTCAACAGGGCACTTGACCACAAAAAGTGATGTCTATAGCTTTGGGGTTGTCCTGCTAGAACTGCTTACAGGAAGGAGAGCAACAGATAAGACAAGACCAAAGGCTGAGCAAAACATTGTGGATTGGTCAAAACCTTACTTGAGTAGCAGTAGAAGGTTAAGGTACATTATGGATCCAAGGCTTGCAGGCCAATATTCTGTGAAGGGTACAAAGGAGATGGCACATTTGGCATTGCAATGCATAAGTTTGAATCCTAAAGATAGGCCAAGGATGGCAACAATTGTGGAAACTCTTGAAAGCCTGCAACAGTTCACAGACATGGCAGTTACCAGTGGACACTGGCCAGCATCAACAAAATCTACTAGAAATGGAGCCTCCAACAATAAGGTGAAAACCAGAGCAAGTGCAAATCACAAGAAACCCTCTCCTCCAGTTCCGAGCAAAAAAACTTAA 1260 0.4373 MKQPSKPWRPFTSNCCSTEDQTIFRNFSRCKTSRSDFSKNIAPLPSFRRLSFSDLSRSSSTRINEDLAQSFGADLFDFQLSELRAITQNFSSNFLLGEGGFGTVHKGYIDDNLRLGLKAQPVAVKLLDIEGLQGHREWLAEVIFLGQLRHPNLVKLIGYCCEDEERLLVYEFMPRGSLENHLFRTGLTSLPWGTRLRIAIGAAKGLSFLHGAEKPVIYRDFKTSNVLLDSDFTAKLSDFGLAKMGPEGSKSHVTTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLTGRRATDKTRPKAEQNIVDWSKPYLSSSRRLRYIMDPRLAGQYSVKGTKEMAHLALQCISLNPKDRPRMATIVETLESLQQFTDMAVTSGHWPASTKSTRNGASNNKVKTRASANHKKPSPPVPSKKT. 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01190 419 MobiDBLite consensus disorder prediction 381 401 - -
Seca10g01190 419 FunFam Serine/threonine-protein kinase BIK1 56 172 - -
Seca10g01190 419 Pfam Protein tyrosine and serine/threonine kinase 96 367 IPR001245 GO:0004672|GO:0006468
Seca10g01190 419 ProSitePatterns Protein kinases ATP-binding region signature. 96 125 IPR017441 GO:0005524
Seca10g01190 419 Gene3D Transferase(Phosphotransferase) domain 1 173 383 - -
Seca10g01190 419 SUPERFAMILY Protein kinase-like (PK-like) 73 368 IPR011009 -
Seca10g01190 419 PANTHER OS01G0588500 PROTEIN-RELATED 61 371 - -
Seca10g01190 419 FunFam Serine/threonine-protein kinase PBS1 173 382 - -
Seca10g01190 419 MobiDBLite consensus disorder prediction 381 419 - -
Seca10g01190 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Seca10g01190 419 CDD STKc_IRAK 96 370 - -
Seca10g01190 419 ProSiteProfiles Protein kinase domain profile. 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01190 419 Gene3D Phosphorylase Kinase; domain 1 52 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01190 Seca-Chr10 11678889 11682406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01190 64 383 Glycoside Hydrolase AT3G07070 49.845 1.68e-104 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca10g01190 PK_Tyr_Ser-Thr 4.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01190 - - gmx:100814241 738.413