Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01182 ATGGGGTCCAGTGGCAGCAAAGCCACTTCCTCTTGCAGTTCATCGTCGTCTTCGGGCAGTTTCCGGAAGGGTCGATCTAAGGGACATAGAGGCTTCCCTTCTTATTGTCTTGGAACAACATCTGGATCTCGTGACAGTGACAATGACGATCAGGTTTGTGATCAGAATAAAGTAAATGGAAGGGATGTTACATACACTAGCGGCAACGAAATAGACTCAGATGGAGTGAAAACAGGGTCTTTTAGAAAGGTTAAATCTGATGAAATGCCTTGTATGCCTTCTAACATTGAGCTTGATGAGTGGGGTCACACTGCATCCAGAACTGGTAGCAGCTCTGCCCATGCTTCCTCAACTCAGTCCCTGAACCCTTCAAGTCGATTCCTTTCTCGTTTTAGCCTCATTCCTGGTAATCTAAGCTTCAGGCTTAGCAGAACCACCAGTTTGGGATCATCTAGGCCTTGCCCCGTCTCTTCGGAAAATCACTCAATATTTAACAATGAGGATGAGCTTAATCTGCATCCAGGGCTACCTGGCAGCTTGATTAATAGAAATGAAACTCAACAATGTAGTGACTTGCTCAATGCATCTTTTGTTAATCGAGTGCCTGTACAGTATCATGAAGATGCTTCTAATAATTTAAGTTCTAATGCCCCAGCATTGGGTTTGTCTGGCAACTTGCAGAGCAGCCCCACACTTTCTCCTATCCAGGATTTGGTTAGAGATGGATATACTACAAGAGAAGTGCCAGATGTGAACTTGTTTTCTCCAAGAATTCATACTGAGACAGAAAATGTTGAGACTAGGCATACAGATAGACGAAATGGAGCTCGAGAACCTGTTGAACGTAATGTTCGTTTTAGCCGGACTTTAAGTGTTGGAAGGCTTCGTGATAGAGTTCTCCGACGATCATCATTATCTGACTTCACCTTTTGCCCTCTGCAACAAGATAGAGAAGTGAGAGATGCTAGTCAGGATAGTGGAAGACAAGTAGGGGAGAGAGATACAAGAGTGTCACCATCTGATCGTAATGCTGTAAATTCTCATCCTGCATCTGGATATCCTCTTCCCAGCATGTCTAGCTCCTTGCTTAACACCCAAGACTATGAGGTTGAGACTTCACGACCAAGAGAAACTAGGTATCAGGATCTACTAGAACATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATACGATCCCAGGTTCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTGTCTGGCCAACATAGAAATGGTCGTTGTACATGCAGAATAAGTAGTCGTGATAACAATTCAAATGATGATACCAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTTGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCTTCCCGACCTTCTGTGTCTTCTATTGGATCTGTTCCTGCACCAAATGAAGTTGTGGAATCCTTGCCTGTCAAATTATACACTAAGTTGCACAAACATCAGGAAGAACCTATACAATGCTATATATGCCTTGTGGAGTATGAAGATGGAGACAGCATGCGGGTACTGCCTTGCCATCATGAATTTCATACAACATGTATAGACAAATGGCTGAAGGAGATTCACAGGGTATGCCCTCTATGTCGGGGGGACATTTGCATATCTGATTCACTGCCAAGGGAGAACTAA 1719 0.4351 MGSSGSKATSSCSSSSSSGSFRKGRSKGHRGFPSYCLGTTSGSRDSDNDDQVCDQNKVNGRDVTYTSGNEIDSDGVKTGSFRKVKSDEMPCMPSNIELDEWGHTASRTGSSSAHASSTQSLNPSSRFLSRFSLIPGNLSFRLSRTTSLGSSRPCPVSSENHSIFNNEDELNLHPGLPGSLINRNETQQCSDLLNASFVNRVPVQYHEDASNNLSSNAPALGLSGNLQSSPTLSPIQDLVRDGYTTREVPDVNLFSPRIHTETENVETRHTDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSSLSDFTFCPLQQDREVRDASQDSGRQVGERDTRVSPSDRNAVNSHPASGYPLPSMSSSLLNTQDYEVETSRPRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRISSRDNNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNEVVESLPVKLYTKLHKHQEEPIQCYICLVEYEDGDSMRVLPCHHEFHTTCIDKWLKEIHRVCPLCRGDICISDSLPREN. 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01182 572 SUPERFAMILY RING/U-box 495 565 - -
Seca10g01182 572 MobiDBLite consensus disorder prediction 1 22 - -
Seca10g01182 572 Pfam Ring finger domain 516 559 IPR001841 -
Seca10g01182 572 MobiDBLite consensus disorder prediction 1 78 - -
Seca10g01182 572 MobiDBLite consensus disorder prediction 318 360 - -
Seca10g01182 572 MobiDBLite consensus disorder prediction 261 280 - -
Seca10g01182 572 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 571 - -
Seca10g01182 572 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 480 563 IPR013083 -
Seca10g01182 572 SMART ring_2 517 558 IPR001841 -
Seca10g01182 572 ProSiteProfiles Zinc finger RING-type profile. 517 559 IPR001841 -
Seca10g01182 572 MobiDBLite consensus disorder prediction 340 360 - -
Seca10g01182 572 MobiDBLite consensus disorder prediction 318 339 - -
Seca10g01182 572 FunFam Putative RING zinc finger domain superfamily protein 486 564 - -
Seca10g01182 572 MobiDBLite consensus disorder prediction 57 74 - -
Seca10g01182 572 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01182 Seca-Chr10 11599371 11604736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01182 176 566 C3H Transcription Factor Family AT5G45290 54.839 1.06e-119 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01182 - - gmx:100786091 879.396