Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01180 ATGAAGAGCATAAACGACGATGTCTCCACACAAGATCTCGACCCTCAAAGCGACCACAGCTCCGATTATTTAGCACACTCTCAATCGCAGCCTCAGCCTCGCCGCCCTCGAGGCTTCGCGGCGGCGGCGGCTTCGACGGGGAACAATTCCGGCGGAAAGGGAAAGAAGGAGAGAGAAAAAGAGAAGGAGCGTACGAAGCTCCGGGAACGACACCGTCGAGCCATCACGAGCCGCATGCTCGCTGGACTCCGTCAGTATGGGAATTTCCCTCTCCCGGCGCGTGCTGACATGAACGACGTGCTCGCCGCCCTCGCGCGTGAGGCTGGTTGGGTTGTCGATGCCGATGGCACCACCTATCGCCAGTGCCCCCCTCCTTCTCACATGGGGTCATTTGCGGCAAGGTCAGTTGAAAGTCAACTCTCTGCTGGTTCTTTGAGAACTTGCTCTGTTAAGGAACCTCTAGAGAATCAGCCACCAGTACTAAGAATTGATGAATGCTTGTCGCCTGCATCCATCGATTCAGTTGTAATTGCAGAAAGGGACTCAAAGAATGGGAAATATGCAAGTGCAAGCCCCATCAATTCAGTTGACTGCTTGGAGGCTGATCAGCTTATGCAAGATATTCATGCTGGAGTGCATGAGAATGACTTTACTGGCACACCATATGTTCCCGTATTCATAAAGCTTCCAGCTGGTATTATTAACAAATTTTGCCAGTTGATTGACCCTGAAGGTATTAGGCAGGAGCTAATCCATATTAAATCTTTAAATATAGACGGTGTTATTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAACCCGCAGAAATATGTGTGGTCTGGTTATAGGGAGCTTTTTAACATTATTAGAGAATTCAAGCTAAATTTACAGGTTGTTATGGCATTTCATGAATATGGAGGGAATGATTCTAGTGATGCACTGATTTCCCTCCCACAATGGGTTTTGGATATTGGAAAAGACAACCAGGATATATTCTTCACAGATCGTGAAGGACGGAGGAATACTGAATGCCTATCTTGGGGAATTGACAAAGAACGAGTTCTCAAAGGTCGAACTGGAATTGAGGTCTATTTTGATATGATGAGAAGTTTTCGGACAGAGTTTGATGACCTGTTTGCAGAAGGTCTGATTTCTGCTGTAGAAATTGGACTTGGAGCATCTGGGGAGCTGAAATACCCTTCTTTTTCAGAAAGAATGGGATGGAGGTATCCTGGTATCGGTGAGTTTCAGTGCTATGATAAATACCTGCAACATAGTCTACGCAGAGCAGCTAAATTACGTGGTCACTCTTTCTGGGCTAGAGGACCTGATAATGCTGGGCATTACAACTCTATGCCGCATGAAACTGGATTCTTTTGTGAGCGAGGTGATTATGATAACTATTATGGACGCTTCTTCTTACATTGGTACTCCCAGACATTAATAGACCATGCTGATAATGTTCTGTCTCTTGCAAGTCTTGCATTTGAGGAAACAAAAATAATTGTCAAGGTTCCTGCTGTATACTGGTGGTATAAGACCCCTAGTCATGCAGCAGAGTTGACAGCAGGATATCACAACCCCACAAATCAGGATGGATACTCTCCTGTCTTTGAGGTTCTGAAAAAACATGCTGTCACCATGAAATTTGTCTGCTTAGGATTTCATCTTTCCAGCCAGGAAGCTAATGAATCATTGGTTGATCCAGAGGGTTTGAGTTGGCAGGTATTAAATTCAGCTTGGGATCGGGGGTTGATAGACGCTGGAGAGAATGCACTCCTCTGCTATGATAGAGAAGGGTACAGGAGACTGGTTGAGATGGCAAAGCCCAGAAATGATCCTGATCACCGGCACTTCTCTTTCTTTGTTTATCAGCAACCATCTTTGCTTCAGGGAAATGTTTGTTTGTCAGAATTGGATTTCTTCATCAAATGTATGCATGCAACTGCCTCTTCTGCTTTCGGTAATGAGACTGACCATTTGGCGTTGTTGAAATTGAAGGAATCAATATCCAATGACCCATTTGGAATTCTACATTCTTGGAATGCTTCTACCCATTTCTGCAACTGGCATGGAGTCACATGCATGCACCAAAGAGTAACAGAGTTGAACTTACAAGGATATCAGTTGCATGGATCCTTATCTCAACATGTTGGTAATCTCTCTTTTCTGAGACACCTTAATCTCGGAAACAACAGTTTCCATGGAAAGATCCCACAAGAATTGGGTCGGTTGTTACAATTGCAGTATCTCTATCTCACCAATAACTCCTTCACAGGGGAGATTCCTACAAACTTGACAAGTTGCTCTAATCTCAAAGACTTGTTCTTAGATGGAAATAATCTGATTGGCAAAATACCAATTGGAATCGGCTCTCTTTGGAAGCTTCAATCATTGACGGTTGGGAAAAACAATTTAACTGGAGGATTCCCTCCATTTATAGGGAATCTTTCATCCCTCATCCGTGTCTCGGTGGCTTATAATAACTTAGAGGGAGATATTCCACAACAAATATGCCGCCTCAAAAATCTGACAGTGATAGTAGTGGAAGTGAACAAACTATCTGGTACATTTCCTTCTTGCCTTTACAATATGTCATCTCTTATTGTGATCTCAGTTGCAGATAATTACTTTGACGGCACTCTTCAACCCAACATGTTCCACACACTCCCCAATCTCCAATTTTTTTCAATTGGTAGGAATCAATTCTCAGGTCCAATCCCCACTTCCGTGGCAAATGTGTCTACCCTTACACTACTTGATATCGTTGTAAACCATTTTGTTGGAAACGTTCCAAGTCTAGGGAGGCTACAAGATCTTCAGTGGCTAAATCTGGGTAGAAACAGTCTAGGTGACAATTCAATGAATGATTTGGAGTTTTTAAAATCATTGACAAATTGTAGTAAGTTGCAAATGTTAAGTATATCCTATAATAATTTTGGAGGTAGTTTGCCAAATTCCTGGGGTAATCTCTCCACCCAACTCAACCGACTATATGTTGGAGGTAACCACATATCAGGAAAAATTCCCACAGAATTAGGAAATCTAATTAGCTTAACTCTCTTGACCATGGAACTAAATCATTTTGAAGGGACTATTCCAACTACTTTCGGCAGGTTTCAAAATATGCAATTGTTAGCATTGGGTGGAAACCAGCTATCAGGAAATATACCAGCCTTTGTAGGAAATCTCAGTCAATTGTTTTATTTGGATTTATCACAAAATATGTTAGAAGGAAATATTCCTCCAAGCATAGGAACCTGCCAAAAGTTGCAATCACTAAAGCTTTCGCAAAACAACCTTAGAGGAACCATACCTCATGAGGTTTTTAGCGTTTTCTCATTAACAAACTTATTGGACTTGTCACAAAACTCTTTGAGTGGCACTCTCCCTGGTGAAGTGGGCAGGTTAACAAATATAAATTGGTTAGATCTCTCTGAGAATCTTCTGTCTGGTAACATTCCTGGAACCATTGGACAATGCATGAGATTGGAGTACCTTTATTTGCAAGGAAATTCCTTTCATGGTATCATGCCATCCTCCTTGGCTTCACTCAAAGGACTTCAACGTGTAGACCTGTCACGAAACAGCTTGTCTGGATCAATTCCCAAAGGTTTCCAAAATATTTCATTTTTAGAATACTTGAATGTTTCTTATAACATGTTGAATGGTGAGGTACCAACAGAAGGTGTCTTTCAAAATGCAAGCAAGTTAGGAGTGGCCGGAAACAATAAGCTTTGTGGAGGTATTCCAGAGTTGCATCTACCGCCATGCCCTGTCAAAGGTATGAAACATGCAAAACACCATAGGTTGATGGCAGTGATAGTTAGTGTGGTTGCTTTTCTTTTCATATTATCCCTTGTTCTAACTATCTACTGGATGAGGACAAGAAACAAGAAACCATCTTCTGATGAATCAACAATTGGTCAGTTGTCTAAGGTCTCATACCAAGACCTATATCATGGAACCGATGGGTTCTCGGCTGAAAACTTGATTGGATCAGGAAGTTTTGGTTCTGTGTACAAAGGAAATCTTATGTCAGAAGATGATGTTGTTGCCGTAAAGGTGTTGAACCTTCAAAGGAAAGGAGCTCACAAGAGTTTCATTACCGAATGCAATGCACTTAAAAATATTAGACATCGAAATCTGGTGAAAATTTTAACATGTTGTTCTAGTACAGATTACAAAGGCCAAGAATTCAAAGCTCTAGTTTTTGAGTACATGAAAAATGGAAGCTTAGAACAATGGCTGCATCCAAGGACAGCAGGTGAAGAGCATCCAAGAACACTAGACCTTGATCAAAGATTAAATATCATTATGGATGTTGCTTCTGCATTACATTATCTTCATCTTGAATGTGAGCAATTGGTCCTTCATTGTGATCTGAAGCCAAGCAATGTCCTACTTGATGATGGCATGGTTGCTCATGTGAGTGACTTTGGCATAGCAACACTTGTCTCAACCATTGACGGTACCTCTCATAAGCAAACTAGTACAACTGGAATAAAAGGGACTGTTGGCTATGCTCCCCCGGAGTATGGAGTAGGTTCTGAAGTGTCCACACATGGTGACATGTATAGCTTCGGGATTCTTGTGTTGGAAATGCTTACGGGAAGAACACCAACCGATGAAGTGTTTGAAGATGGTCAAAATCTGCATAAGTTTGTTGAGATTTCATTTCCTGATAATCTTTTACAGATTTTGGACCCACCTCTTGTACCAACAGATGAAGAAGCAGCAAGAGAAGAAGAAATTAGTGGGGAGCTCATTTTAACTGTAAAGAAGTGCTTTGTTTCACTTTTTAGGATTGGACTTGCTTGTTCAGTGGAATCACCAAGAGAAAGAATGAATATAGTGGATGTCATTAGAGAGCTAAACAAAATCAGAAACGCCTTTCTCAATGGTGAGTTTTTTAGATGCTTAATTGTATATGCCACCAGCTTTGGTTCTTACCTGATCCATTCCTTATGTAGTTATAATTTGATCTTCTGCTATCAATTGCTATGTATTTCAAAATTCCTAAACTAA 5031 0.415 MKSINDDVSTQDLDPQSDHSSDYLAHSQSQPQPRRPRGFAAAAASTGNNSGGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRQCPPPSHMGSFAARSVESQLSAGSLRTCSVKEPLENQPPVLRIDECLSPASIDSVVIAERDSKNGKYASASPINSVDCLEADQLMQDIHAGVHENDFTGTPYVPVFIKLPAGIINKFCQLIDPEGIRQELIHIKSLNIDGVIVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLNLQVVMAFHEYGGNDSSDALISLPQWVLDIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFDDLFAEGLISAVEIGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQHSLRRAAKLRGHSFWARGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLIDHADNVLSLASLAFEETKIIVKVPAVYWWYKTPSHAAELTAGYHNPTNQDGYSPVFEVLKKHAVTMKFVCLGFHLSSQEANESLVDPEGLSWQVLNSAWDRGLIDAGENALLCYDREGYRRLVEMAKPRNDPDHRHFSFFVYQQPSLLQGNVCLSELDFFIKCMHATASSAFGNETDHLALLKLKESISNDPFGILHSWNASTHFCNWHGVTCMHQRVTELNLQGYQLHGSLSQHVGNLSFLRHLNLGNNSFHGKIPQELGRLLQLQYLYLTNNSFTGEIPTNLTSCSNLKDLFLDGNNLIGKIPIGIGSLWKLQSLTVGKNNLTGGFPPFIGNLSSLIRVSVAYNNLEGDIPQQICRLKNLTVIVVEVNKLSGTFPSCLYNMSSLIVISVADNYFDGTLQPNMFHTLPNLQFFSIGRNQFSGPIPTSVANVSTLTLLDIVVNHFVGNVPSLGRLQDLQWLNLGRNSLGDNSMNDLEFLKSLTNCSKLQMLSISYNNFGGSLPNSWGNLSTQLNRLYVGGNHISGKIPTELGNLISLTLLTMELNHFEGTIPTTFGRFQNMQLLALGGNQLSGNIPAFVGNLSQLFYLDLSQNMLEGNIPPSIGTCQKLQSLKLSQNNLRGTIPHEVFSVFSLTNLLDLSQNSLSGTLPGEVGRLTNINWLDLSENLLSGNIPGTIGQCMRLEYLYLQGNSFHGIMPSSLASLKGLQRVDLSRNSLSGSIPKGFQNISFLEYLNVSYNMLNGEVPTEGVFQNASKLGVAGNNKLCGGIPELHLPPCPVKGMKHAKHHRLMAVIVSVVAFLFILSLVLTIYWMRTRNKKPSSDESTIGQLSKVSYQDLYHGTDGFSAENLIGSGSFGSVYKGNLMSEDDVVAVKVLNLQRKGAHKSFITECNALKNIRHRNLVKILTCCSSTDYKGQEFKALVFEYMKNGSLEQWLHPRTAGEEHPRTLDLDQRLNIIMDVASALHYLHLECEQLVLHCDLKPSNVLLDDGMVAHVSDFGIATLVSTIDGTSHKQTSTTGIKGTVGYAPPEYGVGSEVSTHGDMYSFGILVLEMLTGRTPTDEVFEDGQNLHKFVEISFPDNLLQILDPPLVPTDEEAAREEEISGELILTVKKCFVSLFRIGLACSVESPRERMNIVDVIRELNKIRNAFLNGEFFRCLIVYATSFGSYLIHSLCSYNLIFCYQLLCISKFLN. 1677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01180 1676 SMART LRR_typ_2 1186 1209 IPR003591 -
Seca10g01180 1676 SMART LRR_typ_2 1138 1162 IPR003591 -
Seca10g01180 1676 SMART LRR_typ_2 1090 1113 IPR003591 -
Seca10g01180 1676 SMART LRR_typ_2 818 842 IPR003591 -
Seca10g01180 1676 SMART LRR_typ_2 1210 1235 IPR003591 -
Seca10g01180 1676 SMART LRR_typ_2 1065 1089 IPR003591 -
Seca10g01180 1676 SMART LRR_typ_2 722 746 IPR003591 -
Seca10g01180 1676 Pfam BES1/BZR1 plant transcription factor, N-terminal 52 199 IPR008540 -
Seca10g01180 1676 SMART serkin_6 1327 1634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01180 1676 Gene3D Ribonuclease Inhibitor 702 962 IPR032675 -
Seca10g01180 1676 Gene3D Ribonuclease Inhibitor 963 1118 IPR032675 -
Seca10g01180 1676 ProSiteProfiles Protein kinase domain profile. 1327 1634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01180 1676 Gene3D Phosphorylase Kinase; domain 1 1290 1408 - -
Seca10g01180 1676 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 963 1627 - -
Seca10g01180 1676 Pfam Leucine Rich Repeat 725 744 IPR001611 GO:0005515
Seca10g01180 1676 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 466 485 IPR001554 GO:0000272|GO:0016161
Seca10g01180 1676 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 517 528 IPR001554 GO:0000272|GO:0016161
Seca10g01180 1676 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 257 271 IPR001554 GO:0000272|GO:0016161
Seca10g01180 1676 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 393 415 IPR001554 GO:0000272|GO:0016161
Seca10g01180 1676 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 535 558 IPR001554 GO:0000272|GO:0016161
Seca10g01180 1676 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 573 595 IPR001554 GO:0000272|GO:0016161
Seca10g01180 1676 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 500 516 IPR001554 GO:0000272|GO:0016161
Seca10g01180 1676 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 278 296 IPR001554 GO:0000272|GO:0016161
Seca10g01180 1676 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 300 321 IPR001554 GO:0000272|GO:0016161
Seca10g01180 1676 FunFam LRR receptor-like serine/threonine-protein kinase EFR 960 1265 - -
Seca10g01180 1676 SUPERFAMILY Protein kinase-like (PK-like) 1300 1626 IPR011009 -
Seca10g01180 1676 Gene3D Transferase(Phosphotransferase) domain 1 1409 1637 - -
Seca10g01180 1676 Gene3D Ribonuclease Inhibitor 1119 1256 IPR032675 -
Seca10g01180 1676 MobiDBLite consensus disorder prediction 52 69 - -
Seca10g01180 1676 FunFam LRR receptor-like serine/threonine-protein kinase EFR 1298 1408 - -
Seca10g01180 1676 Pfam Leucine rich repeat 1164 1223 IPR001611 GO:0005515
Seca10g01180 1676 SUPERFAMILY (Trans)glycosidases 217 661 IPR017853 -
Seca10g01180 1676 MobiDBLite consensus disorder prediction 1 69 - -
Seca10g01180 1676 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 694 959 - -
Seca10g01180 1676 ProSitePatterns Protein kinases ATP-binding region signature. 1333 1356 IPR017441 GO:0005524
Seca10g01180 1676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1458 1470 IPR008271 GO:0004672|GO:0006468
Seca10g01180 1676 MobiDBLite consensus disorder prediction 1 34 - -
Seca10g01180 1676 Pfam Glycosyl hydrolase family 14 242 622 IPR001554 GO:0000272|GO:0016161
Seca10g01180 1676 SUPERFAMILY L domain-like 994 1249 - -
Seca10g01180 1676 Gene3D Glycosidases 213 699 - -
Seca10g01180 1676 Pfam Leucine rich repeat N-terminal domain 658 696 IPR013210 -
Seca10g01180 1676 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1409 1637 - -
Seca10g01180 1676 Pfam Protein kinase domain 1329 1598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01180 1676 SUPERFAMILY L domain-like 657 951 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01180 Seca-Chr10 11581726 11597656 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01180 12 649 Glycoside Hydrolase AT5G45300 66.967 0.0 897
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca10g01180 Glyco_hydro_14 2.9e-83 CL0058
TF BES1 Seca10g01180 Glyco_hydro_14 2.9e-83 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01180 - K01177 gmx:100785561 1381.7