Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01178 ATGCCCTCCTCTTTGGCTTCACTCAAAGGCCTTCAACGTTTAGACCTATCACGAAACCGCTTGTTTGGATCAATTCCCAAAGGTTTGCAAAATATTTCATTTTTAGAATACTTGAATGTTTCTTTCAACGTGTTGGGTGGTGAGGTTCCAACAGAAGGTGTCTTTCAAAATGCAAGCAAGTTAGCAGTGGCTGGAAACAAAAACCTATGTGGAGGTATTTTAAAGTTGCATCTACCACCATGCCCTGGCAAAGGTATGGAACATGTCAAACACCATAATTTCAAGTTGATAGCAGTGATAGTCGGTGTTGTTTCTTGTCTTTTCATACTATTACTTGTTCTAATTATCTTCTGGATGACGAAAAGAAACAAGAAACCATCTTCTAATTCACCAACAATTGATCAACTAGCTAAGGTTTCGTATCAAAACCTACACAATGGAACGAATGGGTTCTCAGTTAGAAACTTGATTGGATCAGGAAGTTTTGGCTCTGTCTACAAAGGAACACTTGAGTCAGAAGATAGAGTTGTTGCAATAAAAGTCCTAAACCTTCAAAAGAAAGGAGCTCACAAGAGTTTCATTGCTGAATGTAATGCACTCAAAAACATTAGACACCGAAATCTGGTTAGGATTCTGACATGTTGTTCCAGTACAGATTACAAAGGTCAAGAATTTAAAGCTCTAGTTTTTGAGTACATGAAAAATGGAAGCTTAGAAAGTTGGTTGCATCCCACAACAGAAAATACAGATCAGTCCAAATCATTGAACCTTGAACAAAGATTTAATATTATAGTCGATGTTGCTTCAACAATTCATTATCTTCACTATGAATGTGGGGAGCCTGTCATTCATTGTGATTTAAAGCCTAGCAATGTTCTTCTTGATGAATGCATGGTGGCACACGTGAGTGATTTTGGCTTAGCAAGATTGCTCTCAAGTGTTGGAGTTTCTCTGATGCAAAGTAGCACAATTGGAATAAAGGGTACGGTTGGTTACACGCCTCCAGAGTATGGAATGGGTTCTGAGGTGTCAATTGAGGGTGACATTTATAGCTTTGGCATTCTAGTTTTAGAGATGTTAACCGGAAGGAGACCCACAGATGAGCTGTTTGAAGATGGCCATAATATCCATAATCATGTTAAACTTTCAATTCCAAATCAACTTTTGCAGATTGTGGACCCGTCCATTCTCCCCAATGGATTAAAACGAGATATTGACTATGGGAACCTTGGCATTATGCATCCTAATGTGGAGAAATGTTTACTTTCACTCTTTAGGATTGCGCTCACTTGTTCAGTGGAATCACCAAAAGAAAGAATGAGTATGGTTGATGTCACGAGGGAGCTTAATATAATTAAAAGTTTCTTTCTTCCTGGGGTTTAA 1383 0.3839 MPSSLASLKGLQRLDLSRNRLFGSIPKGLQNISFLEYLNVSFNVLGGEVPTEGVFQNASKLAVAGNKNLCGGILKLHLPPCPGKGMEHVKHHNFKLIAVIVGVVSCLFILLLVLIIFWMTKRNKKPSSNSPTIDQLAKVSYQNLHNGTNGFSVRNLIGSGSFGSVYKGTLESEDRVVAIKVLNLQKKGAHKSFIAECNALKNIRHRNLVRILTCCSSTDYKGQEFKALVFEYMKNGSLESWLHPTTENTDQSKSLNLEQRFNIIVDVASTIHYLHYECGEPVIHCDLKPSNVLLDECMVAHVSDFGLARLLSSVGVSLMQSSTIGIKGTVGYTPPEYGMGSEVSIEGDIYSFGILVLEMLTGRRPTDELFEDGHNIHNHVKLSIPNQLLQIVDPSILPNGLKRDIDYGNLGIMHPNVEKCLLSLFRIALTCSVESPKERMSMVDVTRELNIIKSFFLPGV. 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01178 460 SUPERFAMILY L domain-like 2 71 - -
Seca10g01178 460 CDD STKc_IRAK 157 452 - -
Seca10g01178 460 Gene3D Transferase(Phosphotransferase) domain 1 233 455 - -
Seca10g01178 460 SUPERFAMILY Protein kinase-like (PK-like) 124 450 IPR011009 -
Seca10g01178 460 FunFam LRR receptor-like serine/threonine-protein kinase EFR 121 232 - -
Seca10g01178 460 ProSiteProfiles Protein kinase domain profile. 151 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01178 460 Gene3D Ribonuclease Inhibitor 1 89 IPR032675 -
Seca10g01178 460 SMART serkin_6 151 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01178 460 Gene3D Phosphorylase Kinase; domain 1 116 232 - -
Seca10g01178 460 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 233 458 - -
Seca10g01178 460 ProSitePatterns Protein kinases ATP-binding region signature. 157 180 IPR017441 GO:0005524
Seca10g01178 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 282 294 IPR008271 GO:0004672|GO:0006468
Seca10g01178 460 PANTHER OS04G0122200 PROTEIN 2 453 - -
Seca10g01178 460 Pfam Protein kinase domain 153 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01178 Seca-Chr10 11565363 11566892 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01178 5 457 Receptor kinase-like Gene Family AT3G47570 48.817 1.65e-146 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca10g01178 Pkinase 8.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01178 - - gmx:100792724 716.072