Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01177 ATGTTAAGTATATCCTATAATAATTTTGGAGGTAGTTTGCCAAATTCCTGGGGTAATCTCTCCACCCAACTCAACCGACTATATGTTGGAGGTAACCACATATCAGGAAAAATTCCCACAGAATTAGGAAATCTAATTAGCTTAACTCTCTTGACCATGGAACTAAATCATTTTGAAGGGACTATTCCAACTACTTTCGGCAGGTTTCAAAATATGCAATTGTTAGCATTGGGTGGAAACCAGCTATCAGGAAATATACCAGCCTTTGTAGGAAATCTCAGTCAATTGTTTTATTTGGATTTATCACAAAATATGTTAGAAGGAAATATTCCTCCAAGCATAGGAACCTGCCAAAAGTTGCAATCACTAAAGCTTTCGCAAAACAACCTTAGAGGAACCATACCTCATGAGGTTTTTAGCGTTTTCTCATTAACAAACTTATTGGACTTGTCACAAAACTCTTTGAGTGGCACTCTCCCTGGTGAAGTGGGCAGGTTAACAAATATAAATTGGTTAGATCTCTCTGAGAATCTTCTGTCTGGTAACATTCCTGGAACCATTGGACAATGCATGAGATTGGAGTACCTTTATTTGCAAGGGAATCATTTGCCAAATTCAATGAATGATTTGGAGTTTTTAAAATCATTGACAAATTGTAGTAAGTTGCAAATGTTAAGTATATCCTATAATAATTTTGGAGGTAGTTTGCCAAATTCCTGGGGTAATCTCTCCACCCAACTCAACCGACTATATGTTGGGGGCAATTATTTATCAGGAAAAATTCCCACAGAATTAGGAAATCTAATTAGCTTAACTCTCTTGACCATGGAACTAAATCATTTTGAAGGGTTGATTCCAACTACCTTTTGGATGCTTCAGAAGATGCAAGTTTTAGACTTGGGTGGAAACCAGCTATCAGGAATGATACGGACCTTTATAGGAAATCTCAGTCAATTATTTTATTTGGATTTATCACAAAATATGTTAGAAGGAAATATTCCTCCAAACATAGGAAACTGCCATAAGTTACAATACCTATGCCTTTCACAAAACAGACTCAAAGGAACCATACCCTTTGAGGTTTTTAGCCTTTTCTCATTAACAAACTTACTCGACTTGTCACAAAACTCATTGAGTGGTAGCATACCAAAAGAATTGGGTATGCTGAAAAATATTGATGAGCTAGATGTCTCTGAAAATCACTTGTCTGGTGATATTCCTAGAACCATAGGAGAATGCATAAGCTTAGAGTACCTTCATTTGCAAGGAAACTCCTTCCATGGAATCATACCATCCTCCTTGGCTTCTCTCAAAGGTCTTCAATATTTAGACCTGTCAAGAAATTTATTGTCTGGACCAATTCCTGATGTTCTGCAGAATATTTCTACTTTAAAACACTTGACTGTTTCTTTTAACATGTTGGATGGTGAGGTACCAACAAAAGGTGTCTTTGGAAATGCAAGTGAAAAAACAAACAAAAAAACATCTTCTGATTCACCACCAACAATTGATCAGTTGCCCAAGGTTTCGTACCAGAACCTTCACCATGGAACCGATGGGTTCTCAGCTAGAAACTTGATAGGATTGGGAAGTTTTGGCTCTGTCTTCAAAGGAACTCTTGAGTCAGAAGATAAAGTTATTGCTGTAAAGGTCTTAAACCTTCAAAAGAAGGGAGCTCACAAGAGTTTCATTGCTGAATACTACAAAGGTCAAGAATTTAAAGCTCTAGTTTTTGATTATATGAAAAATGGAAGCTTAGAACAATGGCTGCATCCAGGGAAAGTAGATTTTGAGCATCCAAGAACGTTGGACCTTTATCAAAGATTAAATATCATTAATGATGTTGCTTCTGCATTACATTATCTTCATCATGAATGTGAGCAACCGATCCTTCATTGTGATTTAAAGCCAAGCAATGTCCTTCTTGATGATGACATGGTTGCTCATGTGAGTGATTTTGGCATAGCAAGACTTGTCTCAACCATTGATGGTACCTTTCATAAGCAAACTAGTACAATTGGAATAAAGGGGACTGTTGGTTACACTCCTCCAGAATATGGAGCTGGTTCTGAGGTGTCTGCTTATGGTGACATGTATAGCTTTGGGATTCTTATGTTGGAAATGCTTACCGGAAGAAGACCAACTGATAAAATGTTTGAAGATGATCAAAATCTTCATAACTTTGTTGAAATTTCCCTTCCTGATAATCTTTTGCAGATTTTGGACCCACAACTTGTTCCAAGAGATGAAGAAGATGAATTGGAAGAAGAAAACAATGGGAATTTTAGTCCAAATGTTGAGAAGTGCTTAGTTTCACTTTTTAGGATAGGACTTGCTTGTTCTATGGAATCACCAAAAGAAAGAATGAGTGTGGCTGATGTAACTAGGGAACTCAACCTAGTCAGAAAGGCATTTCTTGGTGGTAAGATAAATTAA 2436 0.369 MLSISYNNFGGSLPNSWGNLSTQLNRLYVGGNHISGKIPTELGNLISLTLLTMELNHFEGTIPTTFGRFQNMQLLALGGNQLSGNIPAFVGNLSQLFYLDLSQNMLEGNIPPSIGTCQKLQSLKLSQNNLRGTIPHEVFSVFSLTNLLDLSQNSLSGTLPGEVGRLTNINWLDLSENLLSGNIPGTIGQCMRLEYLYLQGNHLPNSMNDLEFLKSLTNCSKLQMLSISYNNFGGSLPNSWGNLSTQLNRLYVGGNYLSGKIPTELGNLISLTLLTMELNHFEGLIPTTFWMLQKMQVLDLGGNQLSGMIRTFIGNLSQLFYLDLSQNMLEGNIPPNIGNCHKLQYLCLSQNRLKGTIPFEVFSLFSLTNLLDLSQNSLSGSIPKELGMLKNIDELDVSENHLSGDIPRTIGECISLEYLHLQGNSFHGIIPSSLASLKGLQYLDLSRNLLSGPIPDVLQNISTLKHLTVSFNMLDGEVPTKGVFGNASEKTNKKTSSDSPPTIDQLPKVSYQNLHHGTDGFSARNLIGLGSFGSVFKGTLESEDKVIAVKVLNLQKKGAHKSFIAEYYKGQEFKALVFDYMKNGSLEQWLHPGKVDFEHPRTLDLYQRLNIINDVASALHYLHHECEQPILHCDLKPSNVLLDDDMVAHVSDFGIARLVSTIDGTFHKQTSTIGIKGTVGYTPPEYGAGSEVSAYGDMYSFGILMLEMLTGRRPTDKMFEDDQNLHNFVEISLPDNLLQILDPQLVPRDEEDELEEENNGNFSPNVEKCLVSLFRIGLACSMESPKERMSVADVTRELNLVRKAFLGGKIN. 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01177 811 ProSiteProfiles Protein kinase domain profile. 521 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01177 811 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 212 - -
Seca10g01177 811 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 581 810 - -
Seca10g01177 811 FunFam LRR receptor-like serine/threonine-protein kinase EFR 213 494 - -
Seca10g01177 811 SMART LRR_sd22_2 340 361 - -
Seca10g01177 811 SMART LRR_sd22_2 437 463 - -
Seca10g01177 811 SMART LRR_sd22_2 93 125 - -
Seca10g01177 811 SMART LRR_sd22_2 292 318 - -
Seca10g01177 811 SUPERFAMILY RNI-like 148 480 - -
Seca10g01177 811 ProSitePatterns Protein kinases ATP-binding region signature. 527 550 IPR017441 GO:0005524
Seca10g01177 811 SMART LRR_typ_2 389 413 IPR003591 -
Seca10g01177 811 SMART LRR_typ_2 93 117 IPR003591 -
Seca10g01177 811 SMART LRR_typ_2 292 314 IPR003591 -
Seca10g01177 811 SMART LRR_typ_2 268 291 IPR003591 -
Seca10g01177 811 SMART LRR_typ_2 316 340 IPR003591 -
Seca10g01177 811 SMART LRR_typ_2 166 190 IPR003591 -
Seca10g01177 811 SMART LRR_typ_2 437 460 IPR003591 -
Seca10g01177 811 SMART LRR_typ_2 118 141 IPR003591 -
Seca10g01177 811 Pfam Leucine rich repeat 294 353 IPR001611 GO:0005515
Seca10g01177 811 Pfam Leucine rich repeat 148 203 IPR001611 GO:0005515
Seca10g01177 811 Pfam Leucine rich repeat 415 474 IPR001611 GO:0005515
Seca10g01177 811 MobiDBLite consensus disorder prediction 485 504 - -
Seca10g01177 811 ProSiteProfiles Leucine-rich repeat profile. 192 214 IPR001611 GO:0005515
Seca10g01177 811 SUPERFAMILY Protein kinase-like (PK-like) 494 798 IPR011009 -
Seca10g01177 811 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Seca10g01177 811 Gene3D Ribonuclease Inhibitor 109 209 IPR032675 -
Seca10g01177 811 Gene3D Ribonuclease Inhibitor 1 108 IPR032675 -
Seca10g01177 811 SMART serkin_6 521 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01177 811 MobiDBLite consensus disorder prediction 482 504 - -
Seca10g01177 811 Pfam Protein kinase domain 524 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01177 811 SUPERFAMILY RNI-like 2 203 - -
Seca10g01177 811 Gene3D Ribonuclease Inhibitor 210 501 IPR032675 -
Seca10g01177 811 Gene3D Transferase(Phosphotransferase) domain 1 581 805 - -
Seca10g01177 811 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 187 799 - -
Seca10g01177 811 Gene3D Phosphorylase Kinase; domain 1 506 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01177 Seca-Chr10 11560174 11564633 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01177 2 806 Receptor kinase-like Gene Family AT3G47090 37.717 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca10g01177 Pkinase 1.3e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01177 - - ahf:112742943 780.785