Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01176 ATGAAGCCCTTTTCTGTCATGTTAATGTTACCTGCTGCATTCTGGCCTATATGCCACCTTCACATACAAATACTATTTATTTTGAGCTCACTATCGTTTGGCCAAAACGTTACTGCCTCTGTTTTTGGCAACGAGACTGACCATTTGGCGTTGTTGAAATTGAAGGAATCAATATCCAATGACCCTTTTGGAATTCTACATTCTTGGAATGCTTCTACCCATTTCTGCAACTGGCATGGAATCACATGCAGCCCCATGCACCGAAGAGTAACAGAGTTGAACTTACAAGGATATCAGTTGCATGGATCCTTGTCTCCTCACCTTGGCAATCTCTCTTTTCTGAAAAACCTCAACCTTACAAACAACAGTTTCCATGGAAAGATCCCACAAGAATTGGGTCGGTTGTCACAATTGCAGTATCTCTATCTCTCCGACAACTCCTTCACAGGGGAGATTCCTACAAACTTGACAAGTTGCTCTTATCTGAAAGACTTAGTCTTAAATGGAAATAATCTGATTGGCAAAATACCAATTGGGATTGGCTCTCTTGCGAAGCTTCAAATATTGTGGGTTGCGAAAAACAATTTAACAGGAGGAATCCCACCATTCATAGGGAATCTTTCATCCCTAACCATTCTCAGGGTGGGTTATAATAACTTAGAGGGAGATATTCCACAAGATATATGCAGAATAAAAAACTTGACATATATATTCGTGGGTGTCAACAAGTTGTCTGGTACATTTCCTTCTTGCCTTTACAATATGTCATCTCTTATTTTGATCTCAGCTGCAGAAAATTACTTTGATGGCACTCTTCCACCCAACATGTTCCACACACTCCCCAATCTCCAATTTTTTTCAATTGGTATGAATCAATTCTCAGGTCCAATCCCCACTTCCGTGGCAAATATGTCTACCCTTACACTGCTTGATATCAGTCGAAATCATTTTGTCGGACAAGTTCCAAGTCTAGCGAAGCTACAAAATCTTCGGACTCTAAATTTGGGAGTGAACTATCTAGGTGGCAATTCAACTAAGGATTTGGATTTTTTAAAATCATTGACAAACTGCAGTAATTTACTAGTCTTATCTATGTCCAATAATAATTTTGGAGGTAGTTTACCAAGTTCTGTGGGCAATTTGTCCACCCAAATCAACCAACTATATCTTGGGGGCAATCATTTATTGGGAAAAATTCCTGCGGAATTAGGAAATCTGATTAACTTGACTCTCTTGAGCATGGAAATAAATCATTTTGAAGGGACTATTCCAACTGCTTTTGGCAAGTTTCAAAATATGCAATACTTAGGTTTGAACCGAAACAAACTTTCAGGACACATACCACCCTTCATAGGAAATCTCACACATTTGTTTCATTTGGGTTTAGGACAAAATATGTTAGAAGGAAATATTCCTCCAAGCATAGGAAACTGCCAAAAGTTACAATACCTCAACCTTTCACACAACAACCTTAGAGGAACCATACCCTCCAAGGTTTTTAGCCTTTCCTCATTAACAAACTTATTGGACTTGTCACATAACTCTTTGAGTGGCACTCTCCCTGGTGAAGTGGGCAGGCTAACAAGCATCAATTGGCTGGATCTCTCTGAGAATCATCTATCTGGAAACATTCCTGGAAACCTAGGAGAATGCACAAGCTTGGAGTACCTTTATTTGCAAGGGAACTCCTTCCATGGAATCATGCCCTCCTCTTTGGCTTCACTCAAAGGCCTTCAACGTTTAGACCTATCACGAAACCGCTTGTTTGGATCAATTCCCAAAGGTTTGCAAAATATTTCATTTTTAGAATACTTGAATGTTTCTTTCAACGTGTTGGGTGGTGAGGTTCCAACAGAAGGTGTCTTTCAAAATGCAAGCAAGTTAGCAGTGGCTGGAAACAAAAACCTATGTGGAGGTATTTTAAAGTTGCATCTACCACCATGCCCTGGCAAAGGTATGGAACATGTCAAACACCATAATTTCAAGTTGATAGCAGTGATAGTCGGTGTTGTTTCTTGTCTTTTCATACTATTACTTGTTCTAATTATCTTCTGGATGACGAAAAGAAACAAGAAACCATCTTCTAATTCACCAACAATTGATCAACTAGCTAAGGTTTCGTATCAAAACCTACACAATGGAACGAATGGGTTCTCAGTTAGAAACTTGATTGGATCAGGAAGTTTTGGCTCTGTCTACAAAGGAACACTTGAGTCAGAAGATAGAGTTGTTGCAATAAAAGTCCTAAACCTTCAAAAGAAAGGAGCTCACAAGAGTTTCATTGCTGAATGTAATGCACTCAAAAACATTAGACACCGAAATCTGGTTAGGATTCTGACATGTTGTTCCAGTACAGATTACAAAGGTCAAGAATTTAAAGCTCTAGTTTTTGAGTACATGAAAAATGGAAGCTTAGAAAGTTGGTTGCATCCCACAACAGAAAATACAGATCAGTCCAAATCATTGAACCTTGAACAAAGATTTAATATTATAGTCGATGTTGCTTCAACAATTCATTATCTTCACTATGAATGTGGGGAGCCTGTCATTCATTGTGATTTAAAGCCTAGCAATGTTCTTCTTGATGAATGCATGGTGGCACACGTGAGTGATTTTGGCTTAGCAAGATTGCTCTCAAGTGTTGGAGTTTCTCTGATGCAAAGTAGCACAATTGGAATAAAGGGTACGGTTGGTTACACGCCTCCAGAGTATGGAATGGGTTCTGAGGTGTCAATTGAGGGTGACATTTATAGCTTTGGCATTCTAGTTTTAGAGATGTTAACCGGAAGGAGACCCACAGATGAGCTGTTTGAAGATGGCCATAATATCCATAATCATGTTAAACTTTCAATTCCAAATCAACTTTTGCAGATTGTGGACCCGTCCATTCTCCCCAATGGATTAAAACGAGATATTGACTATGGGAACCTTGGCATTATGCATCCTAATGTGGAGAAATGTTTACTTTCACTCTTTAGGATTGCGCTCACTTGTTCAGTGGAATCACCAAAAGAAAGAATGAGTATGGTTGATGTCACGAGGGAGCTTAATATAATTAAAAGTTTCTTTCTTCCTGGGGTTTAA 3084 0.3901 MKPFSVMLMLPAAFWPICHLHIQILFILSSLSFGQNVTASVFGNETDHLALLKLKESISNDPFGILHSWNASTHFCNWHGITCSPMHRRVTELNLQGYQLHGSLSPHLGNLSFLKNLNLTNNSFHGKIPQELGRLSQLQYLYLSDNSFTGEIPTNLTSCSYLKDLVLNGNNLIGKIPIGIGSLAKLQILWVAKNNLTGGIPPFIGNLSSLTILRVGYNNLEGDIPQDICRIKNLTYIFVGVNKLSGTFPSCLYNMSSLILISAAENYFDGTLPPNMFHTLPNLQFFSIGMNQFSGPIPTSVANMSTLTLLDISRNHFVGQVPSLAKLQNLRTLNLGVNYLGGNSTKDLDFLKSLTNCSNLLVLSMSNNNFGGSLPSSVGNLSTQINQLYLGGNHLLGKIPAELGNLINLTLLSMEINHFEGTIPTAFGKFQNMQYLGLNRNKLSGHIPPFIGNLTHLFHLGLGQNMLEGNIPPSIGNCQKLQYLNLSHNNLRGTIPSKVFSLSSLTNLLDLSHNSLSGTLPGEVGRLTSINWLDLSENHLSGNIPGNLGECTSLEYLYLQGNSFHGIMPSSLASLKGLQRLDLSRNRLFGSIPKGLQNISFLEYLNVSFNVLGGEVPTEGVFQNASKLAVAGNKNLCGGILKLHLPPCPGKGMEHVKHHNFKLIAVIVGVVSCLFILLLVLIIFWMTKRNKKPSSNSPTIDQLAKVSYQNLHNGTNGFSVRNLIGSGSFGSVYKGTLESEDRVVAIKVLNLQKKGAHKSFIAECNALKNIRHRNLVRILTCCSSTDYKGQEFKALVFEYMKNGSLESWLHPTTENTDQSKSLNLEQRFNIIVDVASTIHYLHYECGEPVIHCDLKPSNVLLDECMVAHVSDFGLARLLSSVGVSLMQSSTIGIKGTVGYTPPEYGMGSEVSIEGDIYSFGILVLEMLTGRRPTDELFEDGHNIHNHVKLSIPNQLLQIVDPSILPNGLKRDIDYGNLGIMHPNVEKCLLSLFRIALTCSVESPKERMSMVDVTRELNIIKSFFLPGV. 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01176 1027 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 85 350 - -
Seca10g01176 1027 ProSiteProfiles Protein kinase domain profile. 718 1023 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01176 1027 Gene3D Ribonuclease Inhibitor 325 656 IPR032675 -
Seca10g01176 1027 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 800 1025 - -
Seca10g01176 1027 SUPERFAMILY Protein kinase-like (PK-like) 691 1017 IPR011009 -
Seca10g01176 1027 Gene3D Transferase(Phosphotransferase) domain 1 800 1022 - -
Seca10g01176 1027 SMART serkin_6 718 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01176 1027 Pfam Leucine rich repeat N-terminal domain 45 84 IPR013210 -
Seca10g01176 1027 ProSitePatterns Protein kinases ATP-binding region signature. 724 747 IPR017441 GO:0005524
Seca10g01176 1027 FunFam LRR receptor-like serine/threonine-protein kinase EFR 688 799 - -
Seca10g01176 1027 ProSiteProfiles Leucine-rich repeat profile. 480 502 IPR001611 GO:0005515
Seca10g01176 1027 ProSitePatterns Serine/Threonine protein kinases active-site signature. 849 861 IPR008271 GO:0004672|GO:0006468
Seca10g01176 1027 Gene3D Ribonuclease Inhibitor 43 324 IPR032675 -
Seca10g01176 1027 SMART LRR_typ_2 207 231 IPR003591 -
Seca10g01176 1027 SMART LRR_typ_2 575 598 IPR003591 -
Seca10g01176 1027 SMART LRR_typ_2 454 478 IPR003591 -
Seca10g01176 1027 SMART LRR_typ_2 135 159 IPR003591 -
Seca10g01176 1027 SMART LRR_typ_2 527 551 IPR003591 -
Seca10g01176 1027 SMART LRR_typ_2 479 502 IPR003591 -
Seca10g01176 1027 SMART LRR_typ_2 552 574 IPR003591 -
Seca10g01176 1027 Pfam Protein kinase domain 720 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01176 1027 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 303 1017 - -
Seca10g01176 1027 Pfam Leucine rich repeat 553 612 IPR001611 GO:0005515
Seca10g01176 1027 Pfam Leucine rich repeat 480 540 IPR001611 GO:0005515
Seca10g01176 1027 Gene3D Phosphorylase Kinase; domain 1 683 799 - -
Seca10g01176 1027 FunFam LRR receptor-like serine/threonine-protein kinase EFR 351 654 - -
Seca10g01176 1027 SUPERFAMILY L domain-like 384 638 - -
Seca10g01176 1027 CDD STKc_IRAK 724 1019 - -
Seca10g01176 1027 SUPERFAMILY L domain-like 45 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01176 Seca-Chr10 11541727 11544957 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01176 42 1024 Receptor kinase-like Gene Family AT3G47570 46.633 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca10g01176 Pkinase 5.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01176 - - gmx:100792724 1420.6