Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01173 ATGGATCCTTGTCTCCTCATGTTGCAACTCTCTCTCACCAATAACTCCTTCACAGGGGAGATTCCTTCAAACTTGACAAGTTGCTCTCATCTCAAAGTCTTATTCTTAGATGGGAATAATCTGATTGGAAAAATACCAATTGGAATCGGCTCTCTTCGGAAGCTTCAACTATTGGCGCTTGCAAAAAACAATTTAACAGGGGGAGTCCCATCATTTATAGGGAATCTTTCATCCCTAATTGGTCTTTCGGTGGCTTATAATAACTTAGAGGGAGATATTCCACAACAAATATGCCGCCTCAAAAATCTGACAATTATACAGGTGTTTATGAATAAATTGTATGGTACATTTCCTTCTTGTCTTTATAATATGTCATCTCTTACTTACATCGCAGCTGCAAGTAATCACTTTTATGGCTCTCTTCCACCCAACATGTTCGACACACTCCCCAATCTCCAATTTTTTGCAATTGGCGGGAATCAATTCTCAGGTCCAATCCCTACTTCCATGGCAAATGTGTCCACCCTTACAAAACTTGATATCAGTCGAAATCATTTTGTGGGACGAGTTCCAAGTCTAGAGAAGCTACAAGATCTTCAGTGGTTAAATTTGGAACTGAATCATTTAGGTGGAAATACAACTAAGGATTTGGAGTTTTTAAAATCATTGACAAACTGCAGTAAGTTACTAATGATCTCTATATCCTATAATAATTTTGAAGGTAGTTTACCGAATTTTGTGGGCAATTTGTCCAACCAAATAAGCCAACTACATCTTGGGGGTAACAAGATATCAGGAAAAATTCCCGTGGAATTGGGAAATCTAATTAGCTTAACTATCTTGACCATGGAAATAAATCATTTTGAGGGGACTATTCCAACTGCTTTTGCCAAGTTTCAAAATATGCAAGTATTAGATTTGAGCCAAAACAAATTTTCAGGACACATACCAGCCTTCATAGGAAATCTCAGTCAATTGTTTTATTTGGATTTATCAAAGAATGTGTTAGAAGGAAATATTCCTCCAAGCATAGGAAACTGCCAAAAGTTACAACACCTAAACCTTTCGCAGAACAACCTTAAAGGAACCATACCCTCTGAGGTTTTTAGCCTTTCCTCATTAAAAAACTTATTGGACTTGTCACAAAACTCTTTGAGTGGCACTCTCCCTTATGAAGTGGGTAGTCTAACAAATATCAATTGGCTGGATCTCTCTGAGAATCAACTGTCTGGTAACCTTCCTGGAACCATTGGAGAATGCATCAGCTTGGAGTACCTTTATTTGCAAGGAAATTCCTTCCATGGAATCATGTCTTCCTCCTTGGCTTCACTCAAAGGACTTCAACGTTTAGACCTATCACGAAACCGCTTGTCTGGATCAATTCCTAAAGGTCTACAGAACATTTCATTCCTAGAATACTTGAATGTTTCTTTTAACATGTTGGATGGTGAAGTACCTACAGAAGGTGTCTTTCGAAATGCAAGTGCCTTAATGGTGATTGGAAACAACAACCTTTGTGGAGGTATTTCAAAGTTGCATTTACCGCCATGCCCTGTCAAAGGTATGAAACCTGCCAAACACCATAATTTCAGGTTGATAGCAGTCATAGTTAGTGTGGTTGCTTTTCTTCTCATATTGTTATGTATTCTAACAATCTACTGGATGAGGAAAAGAAACAAGAAGCCATCTTCTGATTCACCAACAATTGATCAGCTAGCTAAGGTTTCATATCAAAACCTACACAATGGAACTGATGGGTTCTCAGCTAGAAACTTGATAGGATCTGGAAATTTTGGCACTGTCTACAAAGGAACTCTTGAGTCAGAAGATAGAGTTGTTGCCATAAAGGTCCTAAACCTTCAAAAGAAGGGAGCACACAAGAGTTTTATTGCTGAATGTGATGCACTCAAAAATATTAGACACCGAAATCTGGTTAAGATTTTGACATGTTGTTCCAGTACAGATTACAAAGAGTATGGAATGGGTTCTGAGGTGTCAACTGAAGGTGACATGTATAGCTTCGGAATTCTGGTTTTAGAGATGTTAACTGGAAAGAGGCCCACAGATGAAATGTTTAAAGATGGTCTCAATCTCCATAATTATGTTAAAAGTTCCATTTCAAATCACATTTTGCAGATTGTGGAACCAACTATTCTCCCCAATGGATTCAGACAAGCCAATGGCATGCATCCTAATGTGGAGAAATGTTTACTTTCACTTTTTAGGATTGCGCTTTCTTGTTCAGTGGAATCACCAAGAGAAAGAATGAGTATGGTTGATGTCACTAGGGAGCTTAATCTTATCAAAAGCTTATTTCCTCATGGGGTTTAA 2331 0.381 MDPCLLMLQLSLTNNSFTGEIPSNLTSCSHLKVLFLDGNNLIGKIPIGIGSLRKLQLLALAKNNLTGGVPSFIGNLSSLIGLSVAYNNLEGDIPQQICRLKNLTIIQVFMNKLYGTFPSCLYNMSSLTYIAAASNHFYGSLPPNMFDTLPNLQFFAIGGNQFSGPIPTSMANVSTLTKLDISRNHFVGRVPSLEKLQDLQWLNLELNHLGGNTTKDLEFLKSLTNCSKLLMISISYNNFEGSLPNFVGNLSNQISQLHLGGNKISGKIPVELGNLISLTILTMEINHFEGTIPTAFAKFQNMQVLDLSQNKFSGHIPAFIGNLSQLFYLDLSKNVLEGNIPPSIGNCQKLQHLNLSQNNLKGTIPSEVFSLSSLKNLLDLSQNSLSGTLPYEVGSLTNINWLDLSENQLSGNLPGTIGECISLEYLYLQGNSFHGIMSSSLASLKGLQRLDLSRNRLSGSIPKGLQNISFLEYLNVSFNMLDGEVPTEGVFRNASALMVIGNNNLCGGISKLHLPPCPVKGMKPAKHHNFRLIAVIVSVVAFLLILLCILTIYWMRKRNKKPSSDSPTIDQLAKVSYQNLHNGTDGFSARNLIGSGNFGTVYKGTLESEDRVVAIKVLNLQKKGAHKSFIAECDALKNIRHRNLVKILTCCSSTDYKEYGMGSEVSTEGDMYSFGILVLEMLTGKRPTDEMFKDGLNLHNYVKSSISNHILQIVEPTILPNGFRQANGMHPNVEKCLLSLFRIALSCSVESPRERMSMVDVTRELNLIKSLFPHGV. 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01173 776 Gene3D Ribonuclease Inhibitor 5 216 IPR032675 -
Seca10g01173 776 Gene3D Ribonuclease Inhibitor 217 523 IPR032675 -
Seca10g01173 776 ProSitePatterns Protein kinases ATP-binding region signature. 593 616 IPR017441 GO:0005524
Seca10g01173 776 FunFam LRR receptor-like serine/threonine-protein kinase EFR 558 661 - -
Seca10g01173 776 ProSiteProfiles Leucine-rich repeat profile. 349 371 IPR001611 GO:0005515
Seca10g01173 776 SMART LRR_typ_2 76 100 IPR003591 -
Seca10g01173 776 SMART LRR_typ_2 444 467 IPR003591 -
Seca10g01173 776 SMART LRR_typ_2 396 420 IPR003591 -
Seca10g01173 776 SMART LRR_typ_2 323 347 IPR003591 -
Seca10g01173 776 SMART LRR_typ_2 348 371 IPR003591 -
Seca10g01173 776 SMART LRR_typ_2 468 493 IPR003591 -
Seca10g01173 776 Pfam Leucine Rich Repeat 349 368 IPR001611 GO:0005515
Seca10g01173 776 SUPERFAMILY L domain-like 8 252 - -
Seca10g01173 776 SUPERFAMILY Protein kinase-like (PK-like) 574 763 IPR011009 -
Seca10g01173 776 Pfam Protein kinase domain 590 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01173 776 Gene3D Phosphorylase Kinase; domain 1 550 655 - -
Seca10g01173 776 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 224 - -
Seca10g01173 776 SUPERFAMILY L domain-like 226 507 - -
Seca10g01173 776 Gene3D Transferase(Phosphotransferase) domain 1 656 774 - -
Seca10g01173 776 PANTHER OS04G0122200 PROTEIN 8 119 - -
Seca10g01173 776 Pfam Leucine rich repeat 422 481 IPR001611 GO:0005515
Seca10g01173 776 Pfam Leucine rich repeat 277 336 IPR001611 GO:0005515
Seca10g01173 776 ProSiteProfiles Protein kinase domain profile. 587 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01173 776 FunFam Inactive leucine-rich repeat receptor-like protein kinase 225 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01173 Seca-Chr10 11507240 11510133 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01173 658 772 Receptor kinase-like Gene Family AT3G47570 46.087 1.41e-21 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca10g01173 Pkinase 6.4e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01173 - - lja:Lj2g3v1550320.1 919.842