Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01171 ATGTTTCCTCCATTTTCATTTTGGTTATATATTCTCTTTACTTTCAACTTTGGACCCAAAGCAACTGCCTCTGCTTTGGGAAACGAGACCGACCATTTGGCGTTGCTGAAATTCAAGGAATCAATATCCAATGACCCATTTGGAATCCTACGTTCTTGGAATAGTTCTACCCACTTCTGCAAGTGGCATGGAATCACATGCAGCCCTCCCATGCATCAAAGAGTTACAGAGTTGAATCTAGAAGGATATCAGTTGCATGGGTTCATATCTCCCCATGTTGGCAATCTCTCTCTTCTTAGAAACCTCAACCTTAATAACAATAGCTTCTTTGGAAAAATCCCACAAGAATTAGGTCGGTTATTACAATTGCAACAATTGTTTCTCATCAATAACTCCTTCACAGGGGAGATTCCTACAAACTTGTCAAGTTGCTATAATCTCAAAGTCTTATACTTACGTGGGAATAATCTGATTAGCAAACTACCAATTGAAATTGGCTCTCTTCAAAAGCTTCAACAAATTAGTGTTGCGAAAAACAATTTAACTGGAGGAGTTCCACCATTCATAGGGAATCTTTCATCCCTAACTCTTCTCTCATTGGCTTATAATAACTTAGAGGGAGAAATTCCACATGAAATATGCAGACTCAAAACCCTGACGTATATAGCTGTGGTTGCAGACAAACTGTCTGGCAGGTTTCCTTCTTGTCTTTACAATATGTCAAATCTTACAACAATCTCAGCCGCAAATAACCAATTTGATGGCACTCTTCCACCAAACATGTTCAACACCCTCCCCAATCTCCAATATTTTGGGATTAGCTTCAATCAAATCTCAGGTCTAATCCCCACTTCCTTGGTAAACACTTCAACCCTTACAATACTTGATATCAGCCGAAACCATTTTGTGGGACAAGTTCCAAGTATGGGGAAGCTACAAGATCTTTGGTTTCTACAATTGTCTTTCAACAATCTAGGTGACAATTCAACTAAGGATTTGGATTTTTTGAAATCGTTGACAAATTGTAGTAAGTTGCAATTCTTATCCATATCTGCTAATAATTTTGGAGGTAGTTTGCCAACTTTCTTGGGCAATTTATCCACCCAACTCAGCCAACTATATCTTGGGGGTAATCAGATATTAGGAAAAATTCCTGCAGAATTAGGAAATCTAATCAACTTAACTCTCTTGGCCATGGAAGTGAACCATTTTGAAGGGACTATTCCAGTTACTTTTGGGAAGTTTTCGAAGATGCAGATGTTATATTTGCCTGCGAACAAACTTTCAGGAGATATACCACCCTTCATAAGCAACCTCAGTCAATTGTATTTTTTGAGTTTAGGAGAAAATATGTTAGAAGGAAATATTCCTCCAAGCATAAGAAACTGCCAAAAGTTACAACATCTAGACCTTTCAAAAAACAACCTCAGAGGAACCATACCCGTAGAAGTTTTCACACTTTCCTCTTTGACAAGTTTACTTGACTTGTCACAAAATTCATTGAGTGGCACTCTTCCTGATGAAATCGGCATGCTAAAGAATATTGATATGCTGAATGTCTCTGAGAATCATCTGTCTGGCGATATTCCTGAAACCATTGGAGAATGCACAAGCTTGGAATACCTTTATTTGCAAGGGAATTCCTTCAATGGAAACATACCATCTTCTCTGGCTTCACTCAAAGGTCTGCGATATTTAGACGTATCACGAAATCGCTTGTCTGGATCAATTCCTAATGATCTGCAGAATATTTCTTTCCTAGAATACTTCAATGTATCTTTTAACATGTTGGAAGGAGATGTGCCAACTGAAGGTGTCTTTCGAAATGCAAGTGAGTTAGCAGTAACCGGAAACAATAAGCTTTGTGGAGGTATTATAGAGTTGCATCTACCGCCATGCCCTGACAAAGGTATGAAACCTGCCAAACACCATAATTTCAGGTTGATAGCAGTCATAGTTAGTGTGGTTGCTTTTCTTCTCATATTGTTATGTATTCTAACAATCTACTGGATGTGGAAAAGAAACAAGAAGCCATCTTGTGATTCACCAACAATTGATCAGCTAGCTAAGGTTTCATATCAAAACCTACACAATGGAACTGATGGGTTCTCAGCTAGAAACTTGATAGGATCTGGAAATTTTGGCACTGTCTACAAAGGAACTCTTGAGTCAGAAGATAGAGTTGTTGCCATAAAGGTCCTAAATCTTCAAAAGAAGGGTGCACACAAGAGTTTCATTGCTGAATGTAATGCACTCAAAAATATTAGACATCGAAATCTGGTTAAGATTCTGACATGTTGTTCCAGTACAGATTACAAAGGTCAAGAATTTAAAGCTCTAGTTTTTGAGTACATGAACAATGGAAGCTTAGAAAGCTGGTTGCATCCCACAACAGAAAATACAGATCAGTCCAAATCACTGACCCTTGAGCAAAGGTTAAATATTATTACTGATGTTGCTTCAGCAGTTCATTATCTTCACTATGAATGTGAGCAACCTATCATTCATTGTGATTTAAAGCCTAGCAATGTGCTTCTTGATGATTGTATGGTAGCTCACGTGAGTGATTTTGGCTTAGCAAGATTGCTCCCAAGTGTTGGAGTCTCTCTCAAGCAAAGTAGCACAATTGGAATAAAGGGGACTATTGGTTATGCACCTCCAGAGTATGGAATGGGTTCTGAGATGTCAATTGAAGGCGACATGTATAGCTTTGGGATTCTAGCTTTAGAAATGCTAACTGGAAGGAGACCCACAGATGAAATGTTTGGAGATGGTCATAATCTTCATAATTATGTTAAACTTTCAATTTCAAATAACATTTTGCAGATTGTGGACCCAGCTATTCTCCGCCATGGATTAGATGTGGCTTCTGAAAGTGAGGACCTTGGCATTATGCATCCTAAGATAGAGAAATGTTTACTTTCACTTTTTAGTATTGCACTTGCCTGTTCCGTGGAATCACCGAAAGAAAGAATGAGTATGGTTGATGTCACAAGGGAGCTTAATAAAATCAAAACTTTCTTTCTTACTGAATCAATAACCAGTGACCCATATGAAATCCTACGTACTTGGAATGGTTCTACCCACTTCTGCAAGTGGCGTGGAATCACATGCAACCCCATGCATCAAAGGGTTGGCGAGTTGAACCTACAAGGATATCAATTGCAAGGATCCATATCTCCTCATGTGGGTAATCTCTCTCTTTTGAGGAACCTAAACCTCGGAAACAACAGCTTCCATGGTAAAATTCCACAAGAACTAGGTCGGTTGTTACAATTGCAGCTACTCTATCTTGTCAATAACTCATTGGTAGGAGAAATTCCTATAAATTTGACAAGTTGCTCTGATCTCAAAGTCTTACGCTTACGTGGCAACAACCTAATTGGTAAAATACCAATTGAAATTGGCTCTCTTCGGAAGCTTCAAATATTGGATGTCACAAAAAACAATTTAACAGGAGGAGTCACACCATTCATAGGAAATCTCTCATTCCTAACTGGTCTCTTGGTGGGAACAATTAACTTGGAGGGAAATATTCCACAAGAAATATGCCACCTAAAACGGTTCAAATATATACATGTGAGTGTGAACCAATTGTTTGGTATATTTCCTTCTTGTCTTTACAATATGTCATTTCTTATTGAAATTACAGCTGCGGAGAATCAATTCAATGGGTCTTTTCCACCCAACATGTTCCACACCCTATCCAATCTCCAAGCTTTTGCCATTGCTGGGAATCAATTTTCAGGTTCAATCCCAACTTCCATCACAAATGCCACTGTCCTTCAATTACTTGATATTGCTAATAACCTTTTCACAGGACAAGTTCCAAATCTAGGAAAGCTAAAAGATCTATGGGTTCTAAGTTTGTCTACAAACAATCTAGGTGACAATTCAACCAAGGATTTGGTGTTTTTAGACTCCTTGACAAACTTTAGTAGTTTGCAGTTGTTATCTGTATCCTACAATAATTTTGGGGGTCATTTGCCAAATTCTTTGGGAAATTTTTCCTCCCAGCTCAGAGAACTATATCTTGGGGGTAATCAAATACTAGGAAAAATTCCTGTGGAATTAGGAAATTTAATTGGCTTAACTCTCTTGACCATGGAAGTTAACAACATTGAAGGGATAATTCCAACTACTTTTGGGAAGTTTCAAAAGATGCAAATGTTAGATTTGAGTGGAAATCAGCTTTCAGAGGATATACCAGCATCCATAGGCAACCTCAGTGAATTATTTTATTTGGATTTAGGACAAAATATGTTAGAAGGAAATATTCCTCCAAGTATAGGAAACTGCCAAATGTTACAATACCTAAACCTTTCACAAAACTATCTTAGAGGAACCATACCATTAGAGGTTTTTAGACTTTCCTCTTTAGCTAACTTACTGGACTTGTCTAAAAACTCATTGAGTGGAAGCTTACCAAAAGAAGTTGGCATGCTAAAAAATATTGATGAGCTAGATGTCTCTGAAAATCATTTGTCTGGGGATATTCCTAGAACCATTGGAGAATGCACAAGCTTAGAGTTCCTTCATTTGCAAGGAAACTCCTTCCATGGAATCATACCATCCTCCTTGGCTTCTCTCAAAGGTCTTCAATATTTAGACCTGTCAAGAAATTTATTGTCTGGACCAATTCCTGATGTTTTGCAGAATATTACTACTTTAAAACATTTGAATGTTTCTTTTAACATGTTGGATGGTGAGGTACCAACAAAAGGTGTCTTTGGAAATGCAAGCGAGTTAGCTGTGACTGGAAACAACAAGCTTTGTGGAGGTATTTTACAACTGCATCTACCACCATGCCCTGTCAAGGATAGAAAACGTTCAGTACATCATAATTCCAAGTTGATAGCCGTGATAATTTGTGTGGTTGCTTTTTTCTTCATTCTGTCATTTGTTCTAGCTTTCTTTTGGATCAGAAAAACAAACAAAAAAACATCTTTTGATTCACCACCAACAATTGATCAGTTGCCCAAGGTTTCATACCAAGACCTACACCACGGAACCGATGGGTTCTCAGCTAGAAACTTGATAGGATTGGGAAGTTTTGGCTCTGTCTACAAAGGAACTCTTGAGTCAGAAGATAAAGTTGTTGCTGTAAAGGTCTTAAACCTTCAAAAGAAGGGAGCTCACAAGAGTTTCATTACTGAATGCAATGCACTCAAAAACATTAGACATCGAAATCTGGTTAAGATTTTAACATGTTGTTCCAGTACAGATTACAAAGGTCAAGAATTTAAAGCTCTAGTTTTAGAGTACATGAAAAATGGAAGCTTAGAACAATGGCTGCATCCAAGGACAGGAGGTGAAGAACATCCAAGAACACTAGACCTTGATCAAAGATTAAATATCATTATGGATGTTGTTTCTGCATTACATTATCTTCATCTTGAATGTGAGCAATTGGTCCTTCATTGTGATCTGAAGCCAAGCAATGTCCTTCTCGATGATGACATGGTTGCTCATGTGAGTGATTTTGGCATAGCAAGACTTGTCTCAACCATTGACGGTACCTCTCATAAGCAAACTAGTACAATTGGAATAAAGGGGACTGTTGGCTACACTCCTCCAGAGTATGGAGCGGGTTCTGAGGTGTCTACCTACGGTGACATGTATAGCTTTGGGATTCTTGTGTTGGAAATGCTTACTGGAAGAAGGCCTACAGAAAAAATGTTTGAAGATGATGAAAATCTTCATAACTTTGTTGAAATTTCCCTTCCTGATAATCTTTTGCTGATTTTGGACCCACGACTTGTTCCAAGAGATGAAGAAGATGAATTGGAAGAAGAAAACAATGGGAATATTAGTCCAAATGTTGAGAAGTGCTTAGTTTCACTTTTTCGGATTGGACTTGCTTGTTCTATGGAATCACCAAAAGAAAGAATGAGTGTGGTTGATGTCATTAGGGAGCTCAACCTAATCAGAAAGGCATTTCTTGGTGGTAAGATAAATAGACTCTGCATATAA 5973 0.3807 MFPPFSFWLYILFTFNFGPKATASALGNETDHLALLKFKESISNDPFGILRSWNSSTHFCKWHGITCSPPMHQRVTELNLEGYQLHGFISPHVGNLSLLRNLNLNNNSFFGKIPQELGRLLQLQQLFLINNSFTGEIPTNLSSCYNLKVLYLRGNNLISKLPIEIGSLQKLQQISVAKNNLTGGVPPFIGNLSSLTLLSLAYNNLEGEIPHEICRLKTLTYIAVVADKLSGRFPSCLYNMSNLTTISAANNQFDGTLPPNMFNTLPNLQYFGISFNQISGLIPTSLVNTSTLTILDISRNHFVGQVPSMGKLQDLWFLQLSFNNLGDNSTKDLDFLKSLTNCSKLQFLSISANNFGGSLPTFLGNLSTQLSQLYLGGNQILGKIPAELGNLINLTLLAMEVNHFEGTIPVTFGKFSKMQMLYLPANKLSGDIPPFISNLSQLYFLSLGENMLEGNIPPSIRNCQKLQHLDLSKNNLRGTIPVEVFTLSSLTSLLDLSQNSLSGTLPDEIGMLKNIDMLNVSENHLSGDIPETIGECTSLEYLYLQGNSFNGNIPSSLASLKGLRYLDVSRNRLSGSIPNDLQNISFLEYFNVSFNMLEGDVPTEGVFRNASELAVTGNNKLCGGIIELHLPPCPDKGMKPAKHHNFRLIAVIVSVVAFLLILLCILTIYWMWKRNKKPSCDSPTIDQLAKVSYQNLHNGTDGFSARNLIGSGNFGTVYKGTLESEDRVVAIKVLNLQKKGAHKSFIAECNALKNIRHRNLVKILTCCSSTDYKGQEFKALVFEYMNNGSLESWLHPTTENTDQSKSLTLEQRLNIITDVASAVHYLHYECEQPIIHCDLKPSNVLLDDCMVAHVSDFGLARLLPSVGVSLKQSSTIGIKGTIGYAPPEYGMGSEMSIEGDMYSFGILALEMLTGRRPTDEMFGDGHNLHNYVKLSISNNILQIVDPAILRHGLDVASESEDLGIMHPKIEKCLLSLFSIALACSVESPKERMSMVDVTRELNKIKTFFLTESITSDPYEILRTWNGSTHFCKWRGITCNPMHQRVGELNLQGYQLQGSISPHVGNLSLLRNLNLGNNSFHGKIPQELGRLLQLQLLYLVNNSLVGEIPINLTSCSDLKVLRLRGNNLIGKIPIEIGSLRKLQILDVTKNNLTGGVTPFIGNLSFLTGLLVGTINLEGNIPQEICHLKRFKYIHVSVNQLFGIFPSCLYNMSFLIEITAAENQFNGSFPPNMFHTLSNLQAFAIAGNQFSGSIPTSITNATVLQLLDIANNLFTGQVPNLGKLKDLWVLSLSTNNLGDNSTKDLVFLDSLTNFSSLQLLSVSYNNFGGHLPNSLGNFSSQLRELYLGGNQILGKIPVELGNLIGLTLLTMEVNNIEGIIPTTFGKFQKMQMLDLSGNQLSEDIPASIGNLSELFYLDLGQNMLEGNIPPSIGNCQMLQYLNLSQNYLRGTIPLEVFRLSSLANLLDLSKNSLSGSLPKEVGMLKNIDELDVSENHLSGDIPRTIGECTSLEFLHLQGNSFHGIIPSSLASLKGLQYLDLSRNLLSGPIPDVLQNITTLKHLNVSFNMLDGEVPTKGVFGNASELAVTGNNKLCGGILQLHLPPCPVKDRKRSVHHNSKLIAVIICVVAFFFILSFVLAFFWIRKTNKKTSFDSPPTIDQLPKVSYQDLHHGTDGFSARNLIGLGSFGSVYKGTLESEDKVVAVKVLNLQKKGAHKSFITECNALKNIRHRNLVKILTCCSSTDYKGQEFKALVLEYMKNGSLEQWLHPRTGGEEHPRTLDLDQRLNIIMDVVSALHYLHLECEQLVLHCDLKPSNVLLDDDMVAHVSDFGIARLVSTIDGTSHKQTSTIGIKGTVGYTPPEYGAGSEVSTYGDMYSFGILVLEMLTGRRPTEKMFEDDENLHNFVEISLPDNLLLILDPRLVPRDEEDELEEENNGNISPNVEKCLVSLFRIGLACSMESPKERMSVVDVIRELNLIRKAFLGGKINRLCI. 1991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01171 1990 Gene3D Ribonuclease Inhibitor 1010 1157 IPR032675 -
Seca10g01171 1990 SMART serkin_6 1674 1981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01171 1990 SMART serkin_6 703 1008 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01171 1990 FunFam LRR receptor-like serine/threonine-protein kinase EFR 1305 1609 - -
Seca10g01171 1990 FunFam LRR receptor-like serine/threonine-protein kinase EFR 1645 1755 - -
Seca10g01171 1990 ProSitePatterns Protein kinases ATP-binding region signature. 1680 1703 IPR017441 GO:0005524
Seca10g01171 1990 FunFam LRR receptor-like serine/threonine-protein kinase EFR 674 784 - -
Seca10g01171 1990 ProSitePatterns Serine/Threonine protein kinases active-site signature. 834 846 IPR008271 GO:0004672|GO:0006468
Seca10g01171 1990 Gene3D Transferase(Phosphotransferase) domain 1 1756 1981 - -
Seca10g01171 1990 Gene3D Transferase(Phosphotransferase) domain 1 785 1009 - -
Seca10g01171 1990 SMART LRR_sd22_2 463 484 - -
Seca10g01171 1990 SMART LRR_sd22_2 1138 1164 - -
Seca10g01171 1990 SMART LRR_sd22_2 1530 1556 - -
Seca10g01171 1990 SMART LRR_sd22_2 415 441 - -
Seca10g01171 1990 SMART LRR_sd22_2 1385 1411 - -
Seca10g01171 1990 SMART LRR_sd22_2 560 586 - -
Seca10g01171 1990 SMART LRR_sd22_2 168 194 - -
Seca10g01171 1990 SMART LRR_sd22_2 1337 1353 - -
Seca10g01171 1990 SMART LRR_sd22_2 1090 1113 - -
Seca10g01171 1990 SUPERFAMILY L domain-like 1016 1295 - -
Seca10g01171 1990 SMART LRR_typ_2 439 463 IPR003591 -
Seca10g01171 1990 SMART LRR_typ_2 1530 1553 IPR003591 -
Seca10g01171 1990 SMART LRR_typ_2 144 168 IPR003591 -
Seca10g01171 1990 SMART LRR_typ_2 560 583 IPR003591 -
Seca10g01171 1990 SMART LRR_typ_2 1482 1506 IPR003591 -
Seca10g01171 1990 SMART LRR_typ_2 512 536 IPR003591 -
Seca10g01171 1990 SMART LRR_typ_2 1385 1408 IPR003591 -
Seca10g01171 1990 SMART LRR_typ_2 96 120 IPR003591 -
Seca10g01171 1990 SMART LRR_typ_2 928 951 IPR003591 -
Seca10g01171 1990 SMART LRR_typ_2 240 264 IPR003591 -
Seca10g01171 1990 SMART LRR_typ_2 1361 1384 IPR003591 -
Seca10g01171 1990 SMART LRR_typ_2 1409 1433 IPR003591 -
Seca10g01171 1990 SMART LRR_typ_2 1066 1090 IPR003591 -
Seca10g01171 1990 SMART LRR_typ_2 1312 1336 IPR003591 -
Seca10g01171 1990 SMART LRR_typ_2 464 487 IPR003591 -
Seca10g01171 1990 SMART LRR_typ_2 265 288 IPR003591 -
Seca10g01171 1990 SMART LRR_typ_2 192 216 IPR003591 -
Seca10g01171 1990 SUPERFAMILY L domain-like 368 623 - -
Seca10g01171 1990 Pfam Leucine rich repeat 1364 1422 IPR001611 GO:0005515
Seca10g01171 1990 Pfam Leucine rich repeat 242 302 IPR001611 GO:0005515
Seca10g01171 1990 Pfam Leucine rich repeat 1508 1567 IPR001611 GO:0005515
Seca10g01171 1990 SUPERFAMILY L domain-like 28 325 - -
Seca10g01171 1990 Pfam Leucine Rich Repeat 563 583 IPR001611 GO:0005515
Seca10g01171 1990 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1805 1817 IPR008271 GO:0004672|GO:0006468
Seca10g01171 1990 FunFam LRR receptor-like serine/threonine-protein kinase EFR 334 639 - -
Seca10g01171 1990 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 785 1014 - -
Seca10g01171 1990 Pfam Protein kinase domain 1677 1907 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01171 1990 Pfam Protein kinase domain 706 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01171 1990 ProSiteProfiles Protein kinase domain profile. 1674 1981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01171 1990 Gene3D Phosphorylase Kinase; domain 1 684 784 - -
Seca10g01171 1990 Gene3D Phosphorylase Kinase; domain 1 1655 1755 - -
Seca10g01171 1990 Gene3D Ribonuclease Inhibitor 326 640 IPR032675 -
Seca10g01171 1990 SUPERFAMILY L domain-like 1306 1593 - -
Seca10g01171 1990 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1040 1304 - -
Seca10g01171 1990 SUPERFAMILY Protein kinase-like (PK-like) 1648 1973 IPR011009 -
Seca10g01171 1990 ProSiteProfiles Protein kinase domain profile. 703 1008 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01171 1990 Gene3D Ribonuclease Inhibitor 27 313 IPR032675 -
Seca10g01171 1990 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 70 333 - -
Seca10g01171 1990 Gene3D Ribonuclease Inhibitor 1164 1308 IPR032675 -
Seca10g01171 1990 Gene3D Ribonuclease Inhibitor 1309 1603 IPR032675 -
Seca10g01171 1990 SUPERFAMILY Protein kinase-like (PK-like) 677 1001 IPR011009 -
Seca10g01171 1990 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Seca10g01171 1990 Pfam Leucine rich repeat N-terminal domain 1011 1039 IPR013210 -
Seca10g01171 1990 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1756 1985 - -
Seca10g01171 1990 PANTHER OS04G0122200 PROTEIN 109 221 - -
Seca10g01171 1990 CDD STKc_IRAK 709 1004 - -
Seca10g01171 1990 ProSitePatterns Protein kinases ATP-binding region signature. 709 732 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01171 Seca-Chr10 11465302 11497485 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01171 998 1981 Receptor kinase-like Gene Family AT3G47570 44.467 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca10g01171 Pkinase 3.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01171 - - egr:104424124 1525.38