Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01170 ATGTCATCTCTTATTGTGATCTTAGTTGCAGATAATCACTTTGATGGCTCTCTTCCACCCAACATTTTCCACACACTCCCTAATCTCCGTGTTTTTGGAATTGGCGGGAATCAATTCTTAGGTCCAATCCCCATTTCTGTGGCAAATATGTCTACCCTTACACTACTTGATATCGTTGTAAACCATTTTGTTGGAAACGTTCCAAGTCTAGGGAGGCTACAAGATCTTCGGATTCTAAGTCTAACTTTCAACAGTCTAGGTCACAATTCAATGAAGGATTTGGAGTTTTTAAAATCATTGACAAATTGTAGTAAGTTGCAAGTTTTATCTATAGCCTATAACAATTTTGGAGGTAGTTTGCCAAATTCCGTGGGCAATCTCTCCACCCAACTCAGCCGACTATATGTTGGGGGCAATCATTTATCAGGAAAAATTCCTGCTGAGTTAGGAAATTTAATTAGCTTAATTCTCTTGACCATGCACAGAAACCATTTTGAAGGGATGATTCCAGCTTCTTTCGGGAAGTTTCAGAAGATGCAAGTATTAGATTTGAGCCAAAACAAACTTTCAGGACAAATACCAGCCTTCATAGGAAATCTCAGTGAATTATTTCATTTGGGTTTAGGACAAAATATGTTAGAAGGAAATATTCCTCCAAGCATAGGAAACTGCCAAAAGTTACAATACCTCAACCTTAGAGGAACCATACCCTCTGAGATTTTTAGTCTTTCCTCATCAACAAACTTATTGGACTTGTCACATAACTCTTTGAGTGGCACTCTCCCTTATGAAGTGGGAAGTTTAACAAATATCGATGGGTTGGATCTCTCTGAGAATCACCTGTCTGGTAACCTTCCTGGAACCATTGGAAAATGCATGAGCTTGGAGTACCTTTATTTACAAGGAAATTCTTTCAATGGAAGTATACCGTCCTCATTGGCTTCACTCAAAGGCCTTCAAGAATTAGACCTGTCACGAAACCGCTTGTCTGGATCAATTCCTAAAGGTCTACAGAACATTTCCTTCCTAGAATATTTGAATGTTTCTTTTAACATGTTGGATGGTGAAGTACCAACAGAAGGTGTCTTTCGAAATGCAAGTGCCTTATCGGTGGTTGGAAACAACAACCTTTGTGGAGGTATTTCAAAGTTGCATTTACCACCATGCCCTGTCAAAGGTATGAAACCTGCCAAACATCATAATTTCAAGTTGATAACAGTGATAGTCAGTGTGATTGCTTTTCTTCTCATATTGTTATTTGTTCTAACTATCTACTGGATGAGGAAAAGAAACAAGAAGCCATCTTCTCATTCACCAATAGTTGATCAACTGCCTAAGGTTTCATACCAAGATCTACACAATGGAAGCAATGGGTTCTCAGCTAGAAACTTGGTGGGATATGGAAATTTTGGCTCTGTCTACAAAGGAACTCTTGAGTCAGAACATAGAGGAGTTGTTGCTATAAAGGTCCTAAACCTTCAAAAGAAGGGAGCACAAAAGAGTTTTATTGCTGAATGTGATGCACTAAAAAATATTAGACATCGAAATCTGGTTAAGATCCTGACATGTTGTTCCAGTACAGATTACAAAGGTCAAGAATTTAAAGCTCTAGTTTTTGAGTACTTGAACAATGGGAGCTTAGAAAGTTGGTTGCATTCATCAACGGAAAATAATACAGATCAGCCCAAATCATTGAACCTTGAGCAAAGGTTTAGTATTATTTCCGATGTTGCTTCAGCAGTTCATTATCTTCACTCTGAATGTGGGGAGCCTGTCATTCATTGTGATTTAAAGCCTAGCAACGTTCTTCTTGATGAATGTATGGTAGCTCACGTGAGTGATTTTGGCTTAGCAAGATTGCTCTCAAGTGTTGGAGTCTCTTTGAAGCAAAGTAACACAATTGGAATAAAGGGGACTATTGGTTATGCACCTCCAGAGTATGGAATGGGTTCTGAGGTGTCAATTGAAGGTGACATGTATAGCTTCGGAATTCTGGTTTTAGAAATGTTAACTGGAAAGAGGCCCACAGATGAAATGTTTAAAAATGGTCTCAATCTCCATAGTTATGTTGAAAATTCCATTTCAAATCACCTTTTGCAGATTGTGGACTCGACTCTTCTCCCCAATGGATTGGAACAAGCCACTGACAATGGCATGCATCCTAATGTGGAGAAATGTTTACTTTCACTTTTTAGGATTGCGCTTTCTTGTTCAGTGGAATCACCAAGAGAAAGAATGAGTATGGTAGATGTCACTAGGGAACTTAATCTTATCAAAAGCTTCTTTCCTCATGGGGTTTAA 2301 0.3859 MSSLIVILVADNHFDGSLPPNIFHTLPNLRVFGIGGNQFLGPIPISVANMSTLTLLDIVVNHFVGNVPSLGRLQDLRILSLTFNSLGHNSMKDLEFLKSLTNCSKLQVLSIAYNNFGGSLPNSVGNLSTQLSRLYVGGNHLSGKIPAELGNLISLILLTMHRNHFEGMIPASFGKFQKMQVLDLSQNKLSGQIPAFIGNLSELFHLGLGQNMLEGNIPPSIGNCQKLQYLNLRGTIPSEIFSLSSSTNLLDLSHNSLSGTLPYEVGSLTNIDGLDLSENHLSGNLPGTIGKCMSLEYLYLQGNSFNGSIPSSLASLKGLQELDLSRNRLSGSIPKGLQNISFLEYLNVSFNMLDGEVPTEGVFRNASALSVVGNNNLCGGISKLHLPPCPVKGMKPAKHHNFKLITVIVSVIAFLLILLFVLTIYWMRKRNKKPSSHSPIVDQLPKVSYQDLHNGSNGFSARNLVGYGNFGSVYKGTLESEHRGVVAIKVLNLQKKGAQKSFIAECDALKNIRHRNLVKILTCCSSTDYKGQEFKALVFEYLNNGSLESWLHSSTENNTDQPKSLNLEQRFSIISDVASAVHYLHSECGEPVIHCDLKPSNVLLDECMVAHVSDFGLARLLSSVGVSLKQSNTIGIKGTIGYAPPEYGMGSEVSIEGDMYSFGILVLEMLTGKRPTDEMFKNGLNLHSYVENSISNHLLQIVDSTLLPNGLEQATDNGMHPNVEKCLLSLFRIALSCSVESPRERMSMVDVTRELNLIKSFFPHGV. 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01170 766 ProSiteProfiles Protein kinase domain profile. 459 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01170 766 Gene3D Ribonuclease Inhibitor 91 193 IPR032675 -
Seca10g01170 766 Pfam Leucine rich repeat 294 353 IPR001611 GO:0005515
Seca10g01170 766 Gene3D Transferase(Phosphotransferase) domain 1 542 761 - -
Seca10g01170 766 ProSitePatterns Protein kinases ATP-binding region signature. 465 489 IPR017441 GO:0005524
Seca10g01170 766 ProSitePatterns Serine/Threonine protein kinases active-site signature. 592 604 IPR008271 GO:0004672|GO:0006468
Seca10g01170 766 FunFam LRR receptor-like serine/threonine-protein kinase EFR 430 541 - -
Seca10g01170 766 SMART serkin_6 459 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01170 766 Gene3D Ribonuclease Inhibitor 194 395 IPR032675 -
Seca10g01170 766 SUPERFAMILY Protein kinase-like (PK-like) 431 756 IPR011009 -
Seca10g01170 766 CDD STKc_IRAK 465 758 - -
Seca10g01170 766 Pfam Protein tyrosine and serine/threonine kinase 463 754 IPR001245 GO:0004672|GO:0006468
Seca10g01170 766 SMART LRR_sd22_2 73 96 - -
Seca10g01170 766 SMART LRR_sd22_2 176 202 - -
Seca10g01170 766 SMART LRR_sd22_2 316 342 - -
Seca10g01170 766 PANTHER OS04G0122200 PROTEIN 1 757 - -
Seca10g01170 766 Gene3D Phosphorylase Kinase; domain 1 440 541 - -
Seca10g01170 766 SUPERFAMILY L domain-like 129 379 - -
Seca10g01170 766 SUPERFAMILY RNI-like 2 164 - -
Seca10g01170 766 Gene3D Ribonuclease Inhibitor 1 90 IPR032675 -
Seca10g01170 766 PRINTS Leucine-rich repeat signature 179 192 - -
Seca10g01170 766 PRINTS Leucine-rich repeat signature 316 329 - -
Seca10g01170 766 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 542 764 - -
Seca10g01170 766 FunFam LRR receptor-like serine/threonine-protein kinase EFR 92 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01170 Seca-Chr10 11453836 11456333 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01170 1 762 Receptor kinase-like Gene Family AT3G47570 48.201 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca10g01170 PK_Tyr_Ser-Thr 1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01170 - - gmx:100792724 1089.72