Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01169 ATGAATCCCTTTTCACTCATGTTACATGTATTTTGGCCAATATGCTTTCACATAATACTATTACTATTTGTTTTGAATTCATTGTGTTTTGGCCCCAACACAACTGCCTCTGCATCAGGAAATGAGACTGACCATTTGGCATTGCTCAAATTCAAGGAAGCAATATCCAGTGACCCATTTGGAATCCTAGATTCTTGGAATAGTTCTACCCACTTTTGCAAGTGGCATGGAATCACATGCAGTCCCATGTATCAAAGAGTTACAGAGTTGAACCTAGAAGGATATCAGTTGCATGGATCCATATCTCCTCATGTTGGCAATCTCTCTTTTATGAGAAACTTCAATATCAGAAACAACAGCTTCCATGGAATAATCCCTCAAGAACTGTTCCATTTAGTGCAATTACAGCTACTTCATCTCAACAATAACTCCTTGGTTGGGGAAATTCCTACAAACTTGACAAGTTTGTCTGATCTCAAAGGCTTGTACTTGTCAGGGAACAATCTCATTGGCAGAATACCAATTGAAATTGGCTCTCTTAGGAAGCTCCAAGAAGTATTCATTTGGAACAACAAATTAACAGGGGAAATTCCACCTTCCTTGGGGAATCTTTCATCCCTTACTGTTCTTAATGTGGGTTCCAATAACTTGGAGGGAAATATTCCACAAGAAATATGCCTCTTGAAAAACTTGTCATCCATATCAGTGGGTATAAACAAACTATCTGGTAAACTTCCTTTCTGTCTTTACAATATGTCATCTCTCACTCTATTCTCTGTTGCTCTGAACCAATTTAATGGCTCTCTTCCACCCACAATGCTCAACACCCTTCCCAATCTCCAAACACTTTTCATTGGTGGGAACCAAATCTCAGGTCCAATCCCATCTTCCATCACAAATGCATCTGTCCTTCAAATGTTTGATATCACTCAAAACCATTTTGTTGGACAAGTTCCAAGTTTAGGAAAGCTAAAAGATCTTGGTCTCCTAGGTTTGTCTCAGAACAAGCTAGGAGATAACTCAACTAAAGATTTGGAGTTTTTAAAGTCATTGACAAATAGTAGTAAGTTGTATGTGGTTGATATATCCTACAACAATTTTGGAGGCCATTTACCAGATTCCTTGGGAAACATGTCAAACCAACTCAATAACCTATATCTTGGGGGCAATCATATATCAGGAAATATTCCTATGGCATTAGGAAATCTAGTTAGCTTATTTCTCTTGACCATGGAAAATAACCGTTTTGAAGGGACAATTCCAGCTACTTTTGGGAAGTTTCAAAAGATGCAAGTGTTAGAATTGAGTGGAAACCAATTGTCAGGAGATATACCAGCTTTCATAGGCAATCTCAGTCAGTTGTCTTATTTGGGTTTAGGACATAATATGTTAGAAGGAAATGTTCCTCCAAGTATAGGAAATTGTCAAAAGTTACAACACCTAGACCTTTCACACAACAACCTTAGAGGAACCATACCTGTGGAGGTTTTTAGTCTTTTCTCTTTAACAAACTTATTGGACTTGTCACAAAACTCATTTAGTGGTACTATAGTGGAAGAAGTAAGCATGCTAAAAAATATTGAAACATTGAATGTCTCTGAGAATCATCTGTCTGGTGATATTCCTAGAACCATTGGAGAATGCATAAGTTTGGAGTACCTTTATTTGCAAGGAAATTCCTTCAATGGAGTCATACCATCTTCTTTGGCTTCACTCAAAGGCCTTAGACGTTTAGACTTATCAAGAAACCGTTTGTCTGGATCAATTCCTGAAGGTCTACAGAATATTGCTTTCCTAGAATACTTCAATGTTTCTTTTAACATGTTGGATGGTGAGGTACCAACTAAAGGTGTCTTTCATAATGCAAGTGAGGTGGTGGTAACTGGAAACAATAACCTTTGTGGAGGTATTTCAAAGCTGCATCTACCACCATGCCCTGTCAAAGGTAAGGAACATGCAAAACATCATAGTCACAAGCTGATAGCAGTGATAGTTAGTGTGGTTGCTTTTCTTCTAATACTTCTATTTATTCTAACTATCTATTGTATGAGGAAAAGAAACAAGAAACCAACTATTGATTCACCAGAAATTGACCACCTGGCTAAGGTTTCATATGAAAACCTATACAATGGAACTGATGGATTCTCAACTAGAAACTTGATAGGATCTGGAAATTTTGGACATGTCTACATAGGAACTCTTGAGTCAGAAGATAGAGTTGTTGCCATAAAGGTCCTAAACCTTCAAAATAAGGGAGCTCACAAGAGTTTCATTGCTGAATGTAATGCACTCAAAAATATTAGGCATCGAAATCTGGTTAAGATCTTAACATGCTGTTCTAGTACAGATTACAAAGGTCAAGAATTTAAAGCTTTGGTTTTTGAGTACATGAAAAATGGAAGCTTAGAGAGTTGGTTGCATCCAGAAACAGAAATTGCAGATCCACAAAAATCATTGAACCTTGAGGAAAGGTTAAATATTATTACTGATGTTGCTTTAGCATTTCATTATCTTCACTATGAATGTGAGGAGCCTGTAATTCATTGTGATTTAAAGCCTAGCAATGTTCTTCTTGATGAATGCATGGTAGCACACGTGAGTGATTTTGGCTTAGCAAGATTGCTCTCAAGTGTTGGAGTCTCTCTAATGCAAAGTAGCACAATTGGAATTAAGGGGACAGTTGGTTATGCACCTCCAGAGTATGGAATGGGTTCTGAGGTGTCAATTGAAGGCGACATTTATAGCTTTGGCATTCTAGTTTTAGAGATGTTAACCGGAAGGAGGCCAACAGATGAAATGTTTGAAGATGGTCATAATCTCCATAATTTTGTTAAAATTTCAATTTCAAATGACCTTTTGCATATAGTGGACCCAACTATTCTCCACAATGGATTAAAATGGGCTACTGACAGTGGGGACCTTGGCATTATACATCCTAATGTAGAGAAAAGTTTGCTTTCACTTTTTAGTATTGCACTTGCCTGTTCAGTGGAATCTCCAAAAGAAAGAATGAGTATGGTTGATGTCATAAGGGAGCTTAATATTATCAAGAGTTTCTTTCCTACTGGGTTTTAA 3075 0.3737 MNPFSLMLHVFWPICFHIILLLFVLNSLCFGPNTTASASGNETDHLALLKFKEAISSDPFGILDSWNSSTHFCKWHGITCSPMYQRVTELNLEGYQLHGSISPHVGNLSFMRNFNIRNNSFHGIIPQELFHLVQLQLLHLNNNSLVGEIPTNLTSLSDLKGLYLSGNNLIGRIPIEIGSLRKLQEVFIWNNKLTGEIPPSLGNLSSLTVLNVGSNNLEGNIPQEICLLKNLSSISVGINKLSGKLPFCLYNMSSLTLFSVALNQFNGSLPPTMLNTLPNLQTLFIGGNQISGPIPSSITNASVLQMFDITQNHFVGQVPSLGKLKDLGLLGLSQNKLGDNSTKDLEFLKSLTNSSKLYVVDISYNNFGGHLPDSLGNMSNQLNNLYLGGNHISGNIPMALGNLVSLFLLTMENNRFEGTIPATFGKFQKMQVLELSGNQLSGDIPAFIGNLSQLSYLGLGHNMLEGNVPPSIGNCQKLQHLDLSHNNLRGTIPVEVFSLFSLTNLLDLSQNSFSGTIVEEVSMLKNIETLNVSENHLSGDIPRTIGECISLEYLYLQGNSFNGVIPSSLASLKGLRRLDLSRNRLSGSIPEGLQNIAFLEYFNVSFNMLDGEVPTKGVFHNASEVVVTGNNNLCGGISKLHLPPCPVKGKEHAKHHSHKLIAVIVSVVAFLLILLFILTIYCMRKRNKKPTIDSPEIDHLAKVSYENLYNGTDGFSTRNLIGSGNFGHVYIGTLESEDRVVAIKVLNLQNKGAHKSFIAECNALKNIRHRNLVKILTCCSSTDYKGQEFKALVFEYMKNGSLESWLHPETEIADPQKSLNLEERLNIITDVALAFHYLHYECEEPVIHCDLKPSNVLLDECMVAHVSDFGLARLLSSVGVSLMQSSTIGIKGTVGYAPPEYGMGSEVSIEGDIYSFGILVLEMLTGRRPTDEMFEDGHNLHNFVKISISNDLLHIVDPTILHNGLKWATDSGDLGIIHPNVEKSLLSLFSIALACSVESPKERMSMVDVIRELNIIKSFFPTGF. 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01169 1024 SMART LRR_sd22_2 427 453 - -
Seca10g01169 1024 SMART LRR_sd22_2 277 303 - -
Seca10g01169 1024 SMART LRR_sd22_2 475 496 - -
Seca10g01169 1024 SMART LRR_sd22_2 572 595 - -
Seca10g01169 1024 Pfam Leucine rich repeat N-terminal domain 42 81 IPR013210 -
Seca10g01169 1024 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 350 1014 - -
Seca10g01169 1024 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 43 151 - -
Seca10g01169 1024 Pfam Protein kinase domain 717 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01169 1024 SUPERFAMILY L domain-like 382 635 - -
Seca10g01169 1024 Gene3D Ribonuclease Inhibitor 157 244 IPR032675 -
Seca10g01169 1024 ProSiteProfiles Protein kinase domain profile. 715 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01169 1024 Gene3D Ribonuclease Inhibitor 248 343 IPR032675 -
Seca10g01169 1024 FunFam LRR receptor-like serine/threonine-protein kinase EFR 343 651 - -
Seca10g01169 1024 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 797 1022 - -
Seca10g01169 1024 ProSiteProfiles Leucine-rich repeat profile. 477 499 IPR001611 GO:0005515
Seca10g01169 1024 Gene3D Phosphorylase Kinase; domain 1 696 796 - -
Seca10g01169 1024 Gene3D Ribonuclease Inhibitor 344 646 IPR032675 -
Seca10g01169 1024 ProSitePatterns Protein kinases ATP-binding region signature. 721 744 IPR017441 GO:0005524
Seca10g01169 1024 FunFam LRR receptor-like serine/threonine-protein kinase EFR 685 796 - -
Seca10g01169 1024 SMART LRR_typ_2 572 595 IPR003591 -
Seca10g01169 1024 SMART LRR_typ_2 204 228 IPR003591 -
Seca10g01169 1024 SMART LRR_typ_2 524 548 IPR003591 -
Seca10g01169 1024 SMART LRR_typ_2 277 301 IPR003591 -
Seca10g01169 1024 SMART LRR_typ_2 451 475 IPR003591 -
Seca10g01169 1024 SMART LRR_typ_2 476 499 IPR003591 -
Seca10g01169 1024 SMART LRR_typ_2 132 156 IPR003591 -
Seca10g01169 1024 Pfam Leucine rich repeat 550 609 IPR001611 GO:0005515
Seca10g01169 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 846 858 IPR008271 GO:0004672|GO:0006468
Seca10g01169 1024 Pfam Leucine Rich Repeat 477 493 IPR001611 GO:0005515
Seca10g01169 1024 SMART serkin_6 715 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01169 1024 PRINTS Leucine-rich repeat signature 572 585 - -
Seca10g01169 1024 PRINTS Leucine-rich repeat signature 478 491 - -
Seca10g01169 1024 FunFam Leucine-rich repeat receptor protein kinase EMS1 152 248 - -
Seca10g01169 1024 SUPERFAMILY L domain-like 41 337 - -
Seca10g01169 1024 SUPERFAMILY Protein kinase-like (PK-like) 691 1015 IPR011009 -
Seca10g01169 1024 Gene3D Ribonuclease Inhibitor 43 156 IPR032675 -
Seca10g01169 1024 Gene3D Transferase(Phosphotransferase) domain 1 797 1019 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01169 Seca-Chr10 11403951 11407316 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01169 41 1020 Receptor kinase-like Gene Family AT3G47570 46.324 0.0 844
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca10g01169 Pkinase 7.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01169 - - aprc:113870110 1441.02