Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01139 ATGTTCTCAATATTTCCACTCCGGTGCCGTCGCCGCCGTCACAAGGCTGACATGGCTTACCTCTCCGCCGTAATCGGCATTTTACTTCTGTTTCCGGCGGCGACTTCTCAAGCTCAGATTCTCGAAACAGAACGTCACGTTTTCGGTCCCTTCAACGAATCCAACGCAGCTTTGTTCAACGCTGTACCTTCTGCAACGATCCACCTCGGCGCTCTCCAGGTGACGCCGGACAGCGCCGGAAGCTCCTCTCTTGTGCCTCTAACAAACAACTCCGGCAGGGTTTTCTTCAACGACCCCTTCAAGCTCTGGGATGACGACACCGGAAAACTCGTTTCCTTCAACACTTCGTTCATCGTGAACGTCTTTCGCGTCAACAATGGTACTCCCGGTGAAGGCCTCGCTTTCCTCATTGCCTCTTCTACTTCCGTTCCTCAAAACAGTTACGGCGGTTATTTGGGTCTAACTAACGCCTCCACCGACGGTAACGTAACTAACCGTTTCGTCGCCGTTGAACTTGACACCGTCAAACAGGTCTCCAACTTCGACATCGATGATAACCACATGGGGCTTGACATTAACAGCGTTCGTTCCAACGTGAGTGTTTCTCTGTCAAGGTTTGGTTTTCAGATCTCGCCTAATGGTACCCAATTTTACGCTCTGTGGGTTGAATATGACGGTGATAAGAAGGTGATTGATGTGTATATGGCGGAGCAATCTGCACCGGATGCTCCGTTAGCGGCGAAGCCGGTGAAACCCGTTTTGAGTTCGGGTCTTGATCTCAAAGGGGTGGTGAATCAAAGATCCTATTTTGGGTTCTCTGCTTCTACTGGAGTTACTGTTGAGTTGAACTGTGTGTTGAGATGGAATATATCGATTGAGGTTTTTCCTGAGAAAGGTGGAAATGGGAACTCGTTGACGATTGGTTTGGGTGTTGGGGTGCCTTTGGTGGTTCTGCTTGTGGCAGGGGTTGGTGGGTTGGTGTATTACATATGCAGGAAGAAGAGGGAAAGAGCTTCTGATCCTCAGATTGTGGGTACACTCAAGAGCCTACCTGGAACACCGAGAGAGTTTAATTATCAGGAATTGAAGAAGGCAACGAATAATTTTGATGAGAAGCATAAGCTTGGACAAGGAGGGTATGGTGTGGTTTACAGAGGGACACTGCCAAAGGAGAAGTTGGAAGTGGCGGTTAAGATGTTTAGCAGGGATAAGATGAAAAGCACTGATGATTTCTTGGCTGAACTTACTATTATCAATCGTCTCCGTCACAAACATTTAGTCCGGTTACAAGGATGGTGCCACAAAAATGGGGTATTGCTCTTAGTGTACGATTACATGCCCAATGGCAGTTTGGACAACCATATCTTTTGTGAGGAAGGGACCAGCACTACCCCACTAAGTTGGCATCTAAGATACAAAATCTTATCAGGGGTGGCTTCTGCATTGAATTACCTGCATAATGAGTATGATCAGAAAGTGGTCCACAGAGATCTTAAGGCCAGCAACATCATGTTGGACTCTGACTTCAATGCTCGGTTAGGTGACTTTGGCTTGGCTCGTGCACTTGAGAATGAAAAAACATCATATGCAGAGATGGAAGGAGTGCAAGGAACCATGGGATACATTGCACCTGAATGTTTCCACACAGGCAAAGCCACTAGGGAATCAGATGTTTATGGCTTTGGAGCTGTGCTTCTTGAAGTAGTATGTGGTCAGAGACCGTGGACAAAGAATGAGGGGTATCAGTTTTTGGTGGATTGGGTGTGGCATCTTCACCGTGAAGGAAGGATATTGGAGGCAGTGGATAAGACACTTGGGAATGACTATGTGGTTGAAGAGGCAGAGAGGATATTGAAACTAGGACTAGCTTGCTCTCATCCCATTGCAAGTGAAAGACCAAAAATGCAAACAATTGTTCAGATCATATCAGGGTCAGTGGATGTGCCTTATGTCCCACCATTCAAACCAGCTTTTGTGTGGCCAGCTGTTGATCTAGGGAGCCTAAGTAACCTTACAACAACAACTACTACTGAGTACACACCCATTAACAGCACCACACAATCTTCTTCTTTGCATGTTGAATTCTCTGATAACAGTTCTCTGGTCTAA 2109 0.468 MFSIFPLRCRRRRHKADMAYLSAVIGILLLFPAATSQAQILETERHVFGPFNESNAALFNAVPSATIHLGALQVTPDSAGSSSLVPLTNNSGRVFFNDPFKLWDDDTGKLVSFNTSFIVNVFRVNNGTPGEGLAFLIASSTSVPQNSYGGYLGLTNASTDGNVTNRFVAVELDTVKQVSNFDIDDNHMGLDINSVRSNVSVSLSRFGFQISPNGTQFYALWVEYDGDKKVIDVYMAEQSAPDAPLAAKPVKPVLSSGLDLKGVVNQRSYFGFSASTGVTVELNCVLRWNISIEVFPEKGGNGNSLTIGLGVGVPLVVLLVAGVGGLVYYICRKKRERASDPQIVGTLKSLPGTPREFNYQELKKATNNFDEKHKLGQGGYGVVYRGTLPKEKLEVAVKMFSRDKMKSTDDFLAELTIINRLRHKHLVRLQGWCHKNGVLLLVYDYMPNGSLDNHIFCEEGTSTTPLSWHLRYKILSGVASALNYLHNEYDQKVVHRDLKASNIMLDSDFNARLGDFGLARALENEKTSYAEMEGVQGTMGYIAPECFHTGKATRESDVYGFGAVLLEVVCGQRPWTKNEGYQFLVDWVWHLHREGRILEAVDKTLGNDYVVEEAERILKLGLACSHPIASERPKMQTIVQIISGSVDVPYVPPFKPAFVWPAVDLGSLSNLTTTTTTEYTPINSTTQSSSLHVEFSDNSSLV. 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01139 702 CDD STKc_IRAK 375 642 - -
Seca10g01139 702 SUPERFAMILY Concanavalin A-like lectins/glucanases 47 295 IPR013320 -
Seca10g01139 702 Gene3D Phosphorylase Kinase; domain 1 354 445 - -
Seca10g01139 702 Gene3D Transferase(Phosphotransferase) domain 1 446 647 - -
Seca10g01139 702 Gene3D - 45 301 - -
Seca10g01139 702 ProSiteProfiles Protein kinase domain profile. 369 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01139 702 FunFam probable L-type lectin-domain containing receptor kinase S.5 446 647 - -
Seca10g01139 702 CDD lectin_legume_LecRK_Arcelin_ConA 64 289 IPR001220 GO:0030246
Seca10g01139 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 493 505 IPR008271 GO:0004672|GO:0006468
Seca10g01139 702 ProSitePatterns Protein kinases ATP-binding region signature. 375 398 IPR017441 GO:0005524
Seca10g01139 702 FunFam probable L-type lectin-domain containing receptor kinase S.5 354 445 - -
Seca10g01139 702 Pfam Legume lectin domain 48 293 IPR001220 GO:0030246
Seca10g01139 702 SUPERFAMILY Protein kinase-like (PK-like) 351 666 IPR011009 -
Seca10g01139 702 Pfam Protein kinase domain 370 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01139 702 PANTHER - 79 652 - -
Seca10g01139 702 SMART serkin_6 369 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01139 Seca-Chr10 10994265 10998067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01139 85 658 Receptor kinase-like Gene Family AT5G55830 38.614 8.10e-132 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca10g01139 Pkinase 5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01139 - - gmx:100784558 1036.17