Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01134 ATGGAGTTTGAACCTCTGAGTCTCAGCAACGAGGTCATTGAATTTGATATGATTGGTTTGGGGGATGATGGTGGCATTGACATTGAGCACCCTGTTGAAGACGATGACGACCTTGTTAATGTTGACAATAGTCCTGCTGCTGCTGCTGCTATTACCAGTCCAGTTGCTACTGTGGGACCTCACATCCCTGGAGGGGAAACAATCCTTGAACCTCATCAAGGTATGGATTTTGAATCAGAAGAGGCTGCTAAGGCCTTCTATAATTCCTATGCTCGCCGTGTTGGCTTTAGCACACGGGTTAGCATGTCTCGCCGCTCCAGGCGTGATGGTGCTATAATTCAGAGGTCTTTTGTGTGTGCCAAGGAAGGTTTTCGTGTGGAGAAGGACAGGAATTCTCTTGATGGAAGAGTCAAGCGCCCTCGTGCTGAAACCCGAGTTGGTTGCAAGGCAATGTTGGTTGTGAAAATTCAAGATTCTGGCAGATGGGTTGTTTCTTCCTTTATCAAGGAACACAACCATGAATTGGTTCCACCTGATAAGGTGCATTGCCTTAGGTCTCATCGCCATGTTTCAGGTCCTGCTAAGTCATTGATTGATACTTTGCAGGGTGCTGGAATAGGGCCAAGTGGAATTATGTCTGCACTTATCAAAGAATATGGTGGAATCAGCAATATCGGTTTCACTGAGCGTGACTGTAGGAATTACATGAGGAGCAGTAGGCAAAGGACCCTTGGAGGTGACACTCAAATCCTCTTGGATTACTTGAAGAGCAAACAAGCAGAGAATCCTTCATTTTTCTATGCTGTACAGGGTGATGAAGATCATTGCATGAGTAATATCTTCTGGGTTGATCATAAGGCCAGGACTAACTACACTTACTTTGGTGACACTGTCACTGTTGATACAACATATAGGTCGAACCGCTACAGATTGCCTTTTGCACCTTTCACTGGTGTAAACCATCATGGACAGCCTGTATTATTTGGTTGTGCTTTCCTGATAAATGAATCCGAGGCATCTTTTGTCTGGCTGTTCAAAACCTGGCTTGAAGCAATGTCAAGTAGACCTCCAGTTTCAATTACTACTGATCATGATAGGGTGATTCGTGTAGCTGTCAACCATGTCTTTCCTAACACCCGTCACCGATTTTGCAAGTGGCACATTTTTAAAGAATGCCAAGAGAAGTTGTCTCATGTGCTTTCTGAACACCAAAATTTTGAAGCTGACCTCCATAATTGTGTTAACCTGTCAGAATCCATTGAGGAGTTCGAGTCTTCTTGGTCCTCTCTAATGGATAGGTATGAACTCAAAGAACATGAATGGCTACAAGCAATTTATGGTGATAGGCGGCAGTGGGTTCCAGTGTACTTGAGGGACTCATTTTTCGCAGAAATGTCAATAACACAGCGAAGTGATAGCATTAACTCTTACTTTGATGGATACATCAATGCATCAACAACACTTCAGCTTTTTGTTAAGCAGTATGAGAAGGCTTTGGAGAGCCGTTATGAGAAAGAAGTCAAAGCAGATTATGACACAATAAACACTGCACCAGTTCTGAAGACTCCATCACCCATGGAGAAACAAGCAGCTGGAGTTTACACAAGGAGATTGTTTATCAAATTTCAGGAAGAGTTGGTTGAGACATTAACTTTCTTGGCTAACAAAGTAGAGGAAGAAGAAATGATTACTCTGTATAGGGTAGCCAGATATGGGGAACTTCACAGGGCCTACTTTGTTAGAATTAACATTTCTGAAATAAAAGCTACTTGTAGTTGCCAGATGTTTGAGTTTTCTGGCTTAGTTTGTCGACATATATTGACTGTTTTTAGGGTGACAAATCTTCTTACTTTACCATCTCATTATATTTTAAAAAGATGGAGCAGGAGTGCTAAAAGTGGTGTCGTATTGGAAGAACGTACCACTGATTTGTTAAATGGTGGAGGTGGACGAGAATCTCTAACTATCCGATACAATAATCTTCGTCATGAGGCCTTTAAGTATGTGGATGAGGGAATAACCTCTCCAGAAGTTTATGATGTGGCTATGAGTGCTCTTCAGGAGGCTGCAAATAAAGTGGCACTTGCATCAAAAAATGGTGGAAGACTGGCTATTTTGAATGGAGCTTGTAAAGAAGACCTTCATCAGAGCAATGAAGCAACTTCAAGTTGCAGTGATCCTGCATTTTGTTCACAGCTATCTTCTTCTAAGGATGACCAGGACAGAACAATTGAGAAGTTGAAACGTCAACTTGATCGAGCTCAGAGGAGGTGTGAAGTTTATAGGTCCAACTTACTGACTATTTTAAAAGAAGTTGAAGAGCAGAAGCTACAATTATCAGTCAAAGTCCAAAATATCAAGTTAGAGATGAAAGATTGA 2379 0.4195 MEFEPLSLSNEVIEFDMIGLGDDGGIDIEHPVEDDDDLVNVDNSPAAAAAITSPVATVGPHIPGGETILEPHQGMDFESEEAAKAFYNSYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRVEKDRNSLDGRVKRPRAETRVGCKAMLVVKIQDSGRWVVSSFIKEHNHELVPPDKVHCLRSHRHVSGPAKSLIDTLQGAGIGPSGIMSALIKEYGGISNIGFTERDCRNYMRSSRQRTLGGDTQILLDYLKSKQAENPSFFYAVQGDEDHCMSNIFWVDHKARTNYTYFGDTVTVDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFVWLFKTWLEAMSSRPPVSITTDHDRVIRVAVNHVFPNTRHRFCKWHIFKECQEKLSHVLSEHQNFEADLHNCVNLSESIEEFESSWSSLMDRYELKEHEWLQAIYGDRRQWVPVYLRDSFFAEMSITQRSDSINSYFDGYINASTTLQLFVKQYEKALESRYEKEVKADYDTINTAPVLKTPSPMEKQAAGVYTRRLFIKFQEELVETLTFLANKVEEEEMITLYRVARYGELHRAYFVRINISEIKATCSCQMFEFSGLVCRHILTVFRVTNLLTLPSHYILKRWSRSAKSGVVLEERTTDLLNGGGGRESLTIRYNNLRHEAFKYVDEGITSPEVYDVAMSALQEAANKVALASKNGGRLAILNGACKEDLHQSNEATSSCSDPAFCSQLSSSKDDQDRTIEKLKRQLDRAQRRCEVYRSNLLTILKEVEEQKLQLSVKVQNIKLEMKD. 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01134 792 ProSiteProfiles Zinc finger SWIM-type profile. 578 614 IPR007527 GO:0008270
Seca10g01134 792 Pfam FAR1 DNA-binding domain 86 177 IPR004330 -
Seca10g01134 792 SMART 26again6 589 616 IPR006564 GO:0008270
Seca10g01134 792 Pfam MULE transposase domain 298 390 IPR018289 -
Seca10g01134 792 Pfam SWIM zinc finger 578 612 IPR007527 GO:0008270
Seca10g01134 792 Coils Coil 769 789 - -
Seca10g01134 792 Coils Coil 730 764 - -
Seca10g01134 792 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 65 694 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01134 Seca-Chr10 10962122 10965565 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca10g01134 MULE 7.7e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01134 - - gmx:100782414 1359.36