Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01132 ATGAGTGATGTAAAAGAGAACGAGGAAGCTGGCCAGGCCGTGCCCTCAGCTGTGGAAGAAAACCAGCAGTTGGTTGATGCACAGGTTGAAGTTCAACCTGAAGTTGCCTCTGCTCCTGTTACAGTAGAGGAAACATCAAATAATGTTGAAAGTGGGTCAAATCACGTTGAAAATGGATCAATTGTTGTTGAACATGAGAAGGCTGAGCCTCCTGCTGAGGATAAAAATGTCAAACTTGAGGCTGTTTCAGAAGACATGCCACAAGCAGATGTTCAGGATAGTCTTCACTCAGTCCCAGTAGAGGCTGATGCTCAGGTTTCAAATACAACTGAGTGTAAAGTTTCTCCTGATGCGAAAACGGAAGCTGAAGAATGTCCTCAAAGTAGCAAGGGTGTTGAGAATGGTGATAATGTTCATCATAATAGTGTTGCTGACGCTGAAACAGTGGTGGAGGTGAAGCCTGAAGTTTGTGAAGTGGCTGATAGTAAAACTTGTGAGAATGGTGATCCCATGCCCTCAAGTGATAATGATCCTAGTCCTACTATGCCGCAACCTGCCCCTGCTGATACAAAACTTGAAATCAAGAATGTAATAGAAGTTGAGAATAAGGCTGATGAAAAGCAAGCTACTGAACCTGCAGACAATGGGAATTCAAACTCAAAGCACTTGTTTTTCTTGGATGCTGATCATTCTTATGATGGTAATGAGTCAGGAACAGAGGAGGACCAATCAGCTTTTATGAAGGAGCTTGAAAACTTCTTTAAGGAGAGGAGCATGGAATTCAAACCTCCCAAGTTTTATGGAGAAGGACTTAATTGCCTTAAGTTATGGAGAGCTGTAACAAGATTGGGTGGCTATGATAAGGTAACGTCATGTAAGTTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACGACAGTTTCATGGACTTTTCGTGGATTTTATGAGAAGGCCCTTCTTGATTATGAAAGGCATAAAATAAAAGGTGGTGAGCTAAATGTGCCTATTGTTTCTCAACCAGAGCCTATGAATATTGAAAATCAGGCTTCAGCATCAGGTAGAGCCCGGAGAGATGCTGCAGCACGGGCTATGCAGGGTTGGAACTCACAACGTCTCCTTGGCAATGGTGAAGTTAGTGACCCTATTATTAAGGATAGGAATTCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAATTTACTTAAACGTAAGAAACCGTCTTATATGGATAATGCAGTCAAAGCAGCACGCAGTAAACCATCTAAACCACAATTGGATACAGCTGTCATTGATGTTGGACCTCCTGCTGATTGGGTAAAAGTAAATGTACAAAAAACCAAAGATTGTTTTGAAGTATATGCTTTAGTTCCTGGTCTTCTGCGGGAAGAGGTACTATACATTCTGGTTGTTTTATTTTTCTTTTATCTGCATAATGATGAAAATTAA 1467 0.4158 MSDVKENEEAGQAVPSAVEENQQLVDAQVEVQPEVASAPVTVEETSNNVESGSNHVENGSIVVEHEKAEPPAEDKNVKLEAVSEDMPQADVQDSLHSVPVEADAQVSNTTECKVSPDAKTEAEECPQSSKGVENGDNVHHNSVADAETVVEVKPEVCEVADSKTCENGDPMPSSDNDPSPTMPQPAPADTKLEIKNVIEVENKADEKQATEPADNGNSNSKHLFFLDADHSYDGNESGTEEDQSAFMKELENFFKERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIKGGELNVPIVSQPEPMNIENQASASGRARRDAAARAMQGWNSQRLLGNGEVSDPIIKDRNSVSVQKREKQLKSINLLKRKKPSYMDNAVKAARSKPSKPQLDTAVIDVGPPADWVKVNVQKTKDCFEVYALVPGLLREEVLYILVVLFFFYLHNDEN. 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01132 488 Pfam ARID/BRIGHT DNA binding domain 243 327 IPR001606 GO:0003677
Seca10g01132 488 SMART ARID_2 237 327 - -
Seca10g01132 488 CDD ARID 242 327 - -
Seca10g01132 488 MobiDBLite consensus disorder prediction 101 115 - -
Seca10g01132 488 SUPERFAMILY ARID-like 235 340 IPR036431 GO:0003677
Seca10g01132 488 MobiDBLite consensus disorder prediction 101 188 - -
Seca10g01132 488 MobiDBLite consensus disorder prediction 39 56 - -
Seca10g01132 488 Gene3D - 240 337 IPR036431 GO:0003677
Seca10g01132 488 MobiDBLite consensus disorder prediction 35 56 - -
Seca10g01132 488 SMART bright_3 241 332 IPR001606 GO:0003677
Seca10g01132 488 FunFam AT-rich interactive domain-containing protein 3 240 339 - -
Seca10g01132 488 ProSiteProfiles ARID domain profile. 240 331 IPR001606 GO:0003677
Seca10g01132 488 MobiDBLite consensus disorder prediction 1 23 - -
Seca10g01132 488 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 105 471 IPR045147 GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01132 Seca-Chr10 10943849 10950800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01132 224 471 ARID Transcription Factor Family AT1G76510 60.079 2.04e-91 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Seca10g01132 ARID 1.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01132 - - gmx:100791081 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01132 10 10943849 10950800 Seca10g01132 10 10943849 10950800 ECH