Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01118 ATGACACGAACGCTTAGAATTCTCCAATCAACGGACAACGTCACTGCCGTCGGTTCAGTCGCGCCGCCGCCGGAGCCGGTGGCCTTGGAATCGGATTTCGTTGTCATCCTTGCGGCGCTTCTCTGCGCTCTCATATGCGTTGTAGGACTCATCGCCGTCGCAAGGTGCGCGTGGCTCCGGCGAGGTACCGGCGCCGGCGGGAATTCCCCTCGGCAAGCGTTGGCAAACAAAGGCCTGAAGAAGAAGGTGCTCCAGTCGCTGCCGAAGTTCGCTTACGTCGACAGCAACCCTAGCAAGTGGTTGGCTACATCGGAATGCGCGATTTGCCTGGCGGAGTTCACCGCCGGCGACGAGATCCGTGTGCTGCCGCAGTGCGGACATGGATTCCATGTGGCCTGCATAGACACGTGGTTGGGATCACACTCGTCGTGTCCTTCTTGTCGGCAGGTTCTGGCGGTGGCGAGGTGCCAGAAGTGTGGCCGGTTCCCGCCGGCGGCAGGTACTAGCGGCGGAGCCACCAGCACGGCGGTTAGTGAACCAGAATTGAAGTCCAGAGAAGACGACAATGCCGCTGCAAATAATAACAATAATAATAGCGGCGCTGTAAGTGTTACTGTTAGTGGTAGCAGTAACAGTGAACATCACAGCCACAATGGAAACAGTGGGTTCTTGCCATGA 678 0.5782 MTRTLRILQSTDNVTAVGSVAPPPEPVALESDFVVILAALLCALICVVGLIAVARCAWLRRGTGAGGNSPRQALANKGLKKKVLQSLPKFAYVDSNPSKWLATSECAICLAEFTAGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQVLAVARCQKCGRFPPAAGTSGGATSTAVSEPELKSREDDNAAANNNNNNSGAVSVTVSGSSNSEHHSHNGNSGFLP. 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01118 225 FunFam E3 ubiquitin-protein ligase ATL6 68 154 - -
Seca10g01118 225 MobiDBLite consensus disorder prediction 165 225 - -
Seca10g01118 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 153 IPR013083 -
Seca10g01118 225 SMART FANCL_C_2 102 156 - -
Seca10g01118 225 Pfam Ring finger domain 105 148 IPR001841 -
Seca10g01118 225 SUPERFAMILY RING/U-box 84 153 - -
Seca10g01118 225 MobiDBLite consensus disorder prediction 189 225 - -
Seca10g01118 225 CDD RING-H2_EL5-like 105 148 - -
Seca10g01118 225 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Seca10g01118 225 SMART ring_2 106 147 IPR001841 -
Seca10g01118 225 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 28 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01118 Seca-Chr10 10758683 10759360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01118 28 159 C3H Transcription Factor Family AT1G20823 69.504 1.71e-63 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01118 - - gmx:100787383 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01118 10 10758683 10759360 Seca10g01118 10 10758683 10759360 ECH
Seca10g01118 10 10758683 10759360 Seca4g02002 4 34087447 34088148 ECH