Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01114 ATGTTTGAAGTGGATGCTAAAACTGGAAGGCTACTTCGAAGTTGTGGTGCTCCTGACTATGATAATGCTTCCTCTACTACAGTGTGGAGTGATGGCAAGCAGCATGTTGGAAATCTTATCAGTCCAAAGAACAATGAGCTTGCTGATCCTGCAAAGCTTAATCATCCGGAGTTCTTGCTTAAGATAATTAGGACAGATTATTTTTTACAATCTGTTGGTCCTGGATCAGGACTAGTGTTGTGGACCATGTCGGTAGCTGAGTTTAAGGCTGTATTAATTTGCCACTATAATGAAAATTCTTCTGGTAGGACTTCATTTGATGTGGAAGGTGAGCATAATGAAAATCCTTCTAGTAGGACTTCATTTGATGTGGAAGGTGAATATGTTTTTGACAGTGACAGTGTCTTGGGTTTTGCTATGCCATATGCATGTCAAGACAGAAAACTGAAAGAAGTCTATCGTCAGCGGAAGAATTTTCTGTTAGAACCTGAAAAATTATCTGGGAGTTATCAAGAGAATGATATGCTTCCAATGCATACTCCAAATCTTATGCTTCCATCACAGCCTGATATTGATAGATTCATCCCTGATCATGATGGTAATAAAATGCTTCCTGTGCCCATGCCAAATTCTTTGCAGCCAAAAAACAGCTTCTATGACAGTAAAAGGATGATTGAATGGCCAGCAGAACGTGTCATATTGGTTATGGTTCTTGTTGCTTTCACTTTGATCTTCTACGGGCTTCTAGAGGTTAAAAATCAAAATAAATTGAAGAACCAAATCAGTGAACCATATTTAAAAATCCCACCTCCTAAGAAAAAGAGAGCTCGTAAGTCAGGAAAAAACAATATCATTGTTGACAAACAGGATAAGAACCTGCCATCAACAGACGAGGATATACTGACACATAAGGAAACTGAAAGTGAAGCAGGGTTGAACTTATATAAAGTTGATGGACGAAGGATTGGTAAACTATCTGTATCAAATAAAGAAATTGCTAAGGGAAGCAATGGTACCATTGTCCTTGAGGGGATATATGAAGGCCGGGCAGTTGCTGTCAAACGTCTTGTCCAGGCTCATCATGATGTAGCTCATAAAGAAATCCAAAATCTCATTGCATCTGACTTTCATCCAAATATTGTCCGATGGTATGGGGTGGAATATGATCAAGATTTTGTTTACCTTGCTCTGGAGCGTTGTGCATGCAACTTGGATGATTTGATTCATGTCTATGCGGATATATCAGAAAACCCCATGTTTAGCGAGAAGCAAGCTTTTAAATTTTTCAAGAAGGTTCAGATGGAGACAGGGAGGGATGGTATGCAATATCTTTGGAAAGCAAATGGTTATCCATCACCTCTATTACTGAAACTGATGAGGGATGTAGTTTCTGGGCTTGTTCATTTGCATGAACTAGGAATAATACATCGGGATTTGAAACCGCAAAATGTTTTGATAATCAATGAAAGATCATTATGTGCCAAGCTTTCTGATATGGGGATTAGCAAACGCCTTCTTGAAGATATGTCTTCTTTGGGTCATAGTACTACTGGCTGTGGTAGTTCAGGTTGGCAAGCACCAGAGCAACTTGTTCAAGGACGCCAAACACGGGCTGTAGATTTATTTAGTTTAGGTTGTGTCCTCTTTTTCTGTATGACTGCAGGGAGACATCCATTTGGAGAACGTCTTGAGCGTGATGTCAATATTGTGAAAAATAAAAAAGATCTTTTCTTAGTGGAGTTCATGCCTGAAGCTGAGGATCTTATTTCTTGTTTATTAAATCCTGACCCTGATCTAAGGCCAAAGGCGATTGAAGTATTGCACCATCCTCTTTTTTGGAGTTCTGAGATGAGACTTTCATTTCTTCGTGACGTCAGTGATAGGGTGGAACTTGAAGATAGAGAGACTGATTCTGATATTTTGAAGGCATTAGAAAGCATTGCTTCAGTGGCTTTAGGTGTAAAATGGGATGAAAAGTTGGAACCAGCATTCCTTACTAACATTGGTCGTTACAGGCGATATAAATTTGACAGTGTTCGGGACTTGTTGAGGGTCATGAGAAACAAGCTAAATCACTATAGAGAATTGCCTCAAGAAATCCAGGAATTGGTAGGACCTGTTCCAGAAGGATTCAATGACTACTTTGCAAGTCGATTCCCGAGGCTCTTGATTGAAGTGTACAAAGTTATCTGCAAATATTGCAAGGACGATGAATGTTTTCAAAGGTATTTCAGAGGCATTGATTAG 2247 0.3934 MFEVDAKTGRLLRSCGAPDYDNASSTTVWSDGKQHVGNLISPKNNELADPAKLNHPEFLLKIIRTDYFLQSVGPGSGLVLWTMSVAEFKAVLICHYNENSSGRTSFDVEGEHNENPSSRTSFDVEGEYVFDSDSVLGFAMPYACQDRKLKEVYRQRKNFLLEPEKLSGSYQENDMLPMHTPNLMLPSQPDIDRFIPDHDGNKMLPVPMPNSLQPKNSFYDSKRMIEWPAERVILVMVLVAFTLIFYGLLEVKNQNKLKNQISEPYLKIPPPKKKRARKSGKNNIIVDKQDKNLPSTDEDILTHKETESEAGLNLYKVDGRRIGKLSVSNKEIAKGSNGTIVLEGIYEGRAVAVKRLVQAHHDVAHKEIQNLIASDFHPNIVRWYGVEYDQDFVYLALERCACNLDDLIHVYADISENPMFSEKQAFKFFKKVQMETGRDGMQYLWKANGYPSPLLLKLMRDVVSGLVHLHELGIIHRDLKPQNVLIINERSLCAKLSDMGISKRLLEDMSSLGHSTTGCGSSGWQAPEQLVQGRQTRAVDLFSLGCVLFFCMTAGRHPFGERLERDVNIVKNKKDLFLVEFMPEAEDLISCLLNPDPDLRPKAIEVLHHPLFWSSEMRLSFLRDVSDRVELEDRETDSDILKALESIASVALGVKWDEKLEPAFLTNIGRYRRYKFDSVRDLLRVMRNKLNHYRELPQEIQELVGPVPEGFNDYFASRFPRLLIEVYKVICKYCKDDECFQRYFRGID. 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01114 748 PANTHER IRE1-RELATED 1 745 IPR045133 GO:0004521|GO:0004674|GO:0030968
Seca10g01114 748 ProSiteProfiles Protein kinase domain profile. 326 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01114 748 SMART serkin_6 326 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01114 748 SUPERFAMILY Protein kinase-like (PK-like) 330 627 IPR011009 -
Seca10g01114 748 Pfam Ribonuclease 2-5A 618 744 IPR010513 GO:0004540|GO:0006397
Seca10g01114 748 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Seca10g01114 748 Gene3D Transferase(Phosphotransferase) domain 1 445 614 - -
Seca10g01114 748 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 616 748 - -
Seca10g01114 748 ProSiteProfiles KEN domain profile. 615 746 IPR010513 GO:0004540|GO:0006397
Seca10g01114 748 Pfam Protein kinase domain 329 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01114 748 Gene3D KEN domain 615 747 IPR038357 -
Seca10g01114 748 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 318 398 - -
Seca10g01114 748 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 438 614 - -
Seca10g01114 748 CDD RNase_Ire1 616 744 - -
Seca10g01114 748 SMART PGNneu 677 731 - -
Seca10g01114 748 Gene3D Phosphorylase Kinase; domain 1 313 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01114 Seca-Chr10 10701849 10708564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01114 350 611 MAP Kinase Kinase Kinase AT3G06030 26.692 1.34e-21 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Seca10g01114 Pkinase 2.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01114 K08852 - gmx:102661527 1011.52