Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01113 ATGTTTGTGACTTTTGTTTGTGTTACATCTGGCAGGTTTAGTTTTTCTACTATGTTCTTTTCCCACAGGGAAAATACAGTGAGCACACTTGGTCGCTTTGTGCTGCTTATATGGCTTTTTGTAGTTCTGATAATTAACTCAAGTTACACGGCAAGCCTAACCTCAATCCTCACAGTGCAGCAGCTTTCTTCCCCCATTAAAGGCATTGAAAGTTTAGCAAATAGCAAAGAACCCATCGGGTACACGCAGGGTTCTTTTGCTAAAAATTATTTAATTCAGGAAATTGGTATTGATGAATCAAGACTTGTTCCTTTAAGAACACCAGAAGAATCTGCTAGAGCACTGAAAAAGGGTCCCCAGAATGGTGGCGTTGCTGCTTACATTGATGAGCGTGCCTACATTGACCTCTTCCTTTCAAGCCGGTGTGAACTTACTGTTGTAGGTCAAGAGTTCACCAGAAATGGTTGGGGATTTGCCTTTCCCCGAGACTCACCATTAGCAGTTGACCTGTCAACTGCCATTTTGCAATTGACAGACAATGGAGATTTACAAAGGATCCATGACAAATGGCTTTTGAGTAGAGCTTGCATATCACAAGGTGCAAAGCTTGAAGTGGAAAGACTCAAACTCAAAAGCTTCTGGGGCCTTTATGCAATCTGTGGATCTGCCTGTCTGCTTGCTCTATTCATATATCTTATACAGATAATTAGGCAGTACAGCAAGCACTACTCTGAGGAACATGTGTTTAGTGATCAAAACTCTGGATCAGGATCTTCACGCATACGGACTTTCCTTTCATTTGCAGATGAAAAAGAAGAGACGGTTAAGGACCGCGCCAAGAGAAGGAAAATGGAGAGGATCTCATTCAGAGGCAATGAGGGAGGATCATCCATCAACTCCAATAAAGACTATGCTCAGTCTTCATACAGAAGTGATTGTGGTAATGAAGTCTGA 954 0.4203 MFVTFVCVTSGRFSFSTMFFSHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLANSKEPIGYTQGSFAKNYLIQEIGIDESRLVPLRTPEESARALKKGPQNGGVAAYIDERAYIDLFLSSRCELTVVGQEFTRNGWGFAFPRDSPLAVDLSTAILQLTDNGDLQRIHDKWLLSRACISQGAKLEVERLKLKSFWGLYAICGSACLLALFIYLIQIIRQYSKHYSEEHVFSDQNSGSGSSRIRTFLSFADEKEETVKDRAKRRKMERISFRGNEGGSSINSNKDYAQSSYRSDCGNEV. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01113 317 Pfam Ligand-gated ion channel 7 223 IPR001320 GO:0015276|GO:0016020
Seca10g01113 317 Pfam Bacterial extracellular solute-binding proteins, family 3 48 191 IPR001638 -
Seca10g01113 317 FunFam Glutamate receptor 88 195 - -
Seca10g01113 317 MobiDBLite consensus disorder prediction 289 317 - -
Seca10g01113 317 SUPERFAMILY Periplasmic binding protein-like II 48 191 - -
Seca10g01113 317 MobiDBLite consensus disorder prediction 292 317 - -
Seca10g01113 317 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 9 268 IPR015683 -
Seca10g01113 317 SMART GluR_14 4 193 IPR001320 GO:0015276|GO:0016020
Seca10g01113 317 Gene3D - 114 160 - -
Seca10g01113 317 Gene3D - 4 94 - -
Seca10g01113 317 Gene3D - 161 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01113 Seca-Chr10 10698432 10701527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01113 7 292 Ion Channels AT3G51480 64.808 6.50e-129 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01113 K05387 - gmx:100785258 481.1