Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01112 ATGATTAAAGTTTGGGTCTTGGCTTCAATGATTCTCTACAATGGTTTCCTTTCAACTGGGGCTGGCATGAATAATTCCAGAAGACCTGATTTTGTAAATATTGGGGCTCTCTTCTCTTTCAATACCACTGTTGGTAGAATTATAAAAATTGCTATAGAAGCTGCAATTGAAGATGTAAATTCGGATCCAAATATTCTTGGCAAGACCAAGCTGAAGCTCTCACTTCAAGAAGATTCTAAATACAGAGGTTTTCTAAGCATTGCTGAGGTTTTGCAGGTCATGGCAAGACACACTGTGGCAATAATTGGCCCCCATAGCTCTGTGACAGCTCATGTCATAACTCATATTGCAAATGAGCTCCAAGTTCCTCTGCTTTCATTTTCAGCTTTGGATCCTACACTTTCTTCACTTCAATTCCCATTCTTTATTAGAACTTGTCATAGTGATCTTTATCAAATGGCTGCAATAGCAGACCTTGTTGACTACTATGGATGGAAAGAAGTTATTGCTGTCTATATTGATGATGATAATGGGAGGAATGGAATTGGTGCATTAGGTGATAAGCTTGCTGAGAGACGTTGCAGGATCTCATATAAAGCACCTTTGAGCCCGGAAGCAACTCGGGAGGAGATTACAAATGTGCTTGTTCAAGTGGCACTTGCAGAATCACGGGTCATAGTTGTTCATGCCAATACTTTATGGGGCCCCAAGGTGTTTAGTGTTGCAAAGAATCTCGGGATGATGGGAACTGGTTATGTCTGGATAGCAACTGCTTTTCTCTCTGCTCTGCTTGATATAAATAATGGCCTCCCTTCGGATGCAATGGATGACATTCAAGGAGTTTTAACACCACGTGTGTACACACTAGATTCAGAGCTCAAAAGAAGGTTTGTTTCTAGGTGGAAAAACTTGACTCGTGGGAATACTGCTAATGGCCCCCTTGGATTGAGCTTTTTATCTCTTTATGCTTATGATACTGTTTATGTGCTTGCTCATGCACTTGATGCATTTTTCAAGCAAGGGAACCGAATTACATTCTCAAACGATTCAAAGTTATCTGTATTACATGGAGACAACTTGCATCTTGATGCCTTGAACATCTTTGATGAAGGGATTTTGTTACGTAGAAACATTTATGAGGTTAACATGACTGGTGTAACAGGAACATTCAAGTATACATCTGATGGAAGCCTTGTTAATCCTGCATATGAAATCATCAATGTGATTGGAACTGGGTCTCGGAGGATTGGTTATTGGTCTAATTACTCTGGATTATCAGTTGTTCCCCCAGAGTCTCTTTATTCCAAACCAGCCAATCGTTCCAGGGCAAATCAGAAGCTATTCCCTGTGATTTGGCCTGGAGACACAGACCAAAAGCCTCGTGGTTGGGTTTTTCCAAACAGTGGAAGGCTTTTAAAAATTGGAGTACCAAAAGGTGTCAGTTATCATGAATTTGTCTCACAAATACCAGGCACTGATACATTTCAGGGATTCTGCATTGATGTATTTCTTTCTGCAGTTAACCTTTTGCCTTATGCAGTCCCTTATAAGTTTATCCCATATGGGGATGGTAAGAACAATCCTAGTATCACTGAGCTTGTCCGTATGATCACAACGGGTGTGAGTATCATGCCAATAATCTTTTGTGGAGTTTGGATATTTTGTGGTAATCTTTTGAGACCGGTTTTGTTCTTCCTATACAGGAATTTGATGGTGCAGTAG 1722 0.4036 MIKVWVLASMILYNGFLSTGAGMNNSRRPDFVNIGALFSFNTTVGRIIKIAIEAAIEDVNSDPNILGKTKLKLSLQEDSKYRGFLSIAEVLQVMARHTVAIIGPHSSVTAHVITHIANELQVPLLSFSALDPTLSSLQFPFFIRTCHSDLYQMAAIADLVDYYGWKEVIAVYIDDDNGRNGIGALGDKLAERRCRISYKAPLSPEATREEITNVLVQVALAESRVIVVHANTLWGPKVFSVAKNLGMMGTGYVWIATAFLSALLDINNGLPSDAMDDIQGVLTPRVYTLDSELKRRFVSRWKNLTRGNTANGPLGLSFLSLYAYDTVYVLAHALDAFFKQGNRITFSNDSKLSVLHGDNLHLDALNIFDEGILLRRNIYEVNMTGVTGTFKYTSDGSLVNPAYEIINVIGTGSRRIGYWSNYSGLSVVPPESLYSKPANRSRANQKLFPVIWPGDTDQKPRGWVFPNSGRLLKIGVPKGVSYHEFVSQIPGTDTFQGFCIDVFLSAVNLLPYAVPYKFIPYGDGKNNPSITELVRMITTGVSIMPIIFCGVWIFCGNLLRPVLFFLYRNLMVQ. 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01112 573 SUPERFAMILY Periplasmic binding protein-like I 27 464 IPR028082 -
Seca10g01112 573 Gene3D - 467 546 - -
Seca10g01112 573 Gene3D - 50 400 - -
Seca10g01112 573 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Seca10g01112 573 FunFam Glutamate receptor 148 303 - -
Seca10g01112 573 PANTHER OS06G0188250 PROTEIN 7 410 - -
Seca10g01112 573 Pfam Receptor family ligand binding region 50 410 IPR001828 -
Seca10g01112 573 Gene3D - 148 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01112 Seca-Chr10 10695341 10698029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01112 5 541 Ion Channels AT3G51480 54.190 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01112 K05387 - gmx:100785258 916.761