Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01110 ATGGCCCAAGGGACTGATTGCACCTCTCAGACAGTTATAATGCCTGGTGGTGGTTGCCCCAAAGGGGGTAATACTAATAGTGAATGTTCCATGGAGGATCAGAATGGTGATACTGTAGGAAATTTGAATCAGAATATTGGGAAACCTCCAAGGGATCATTCGGTTATGCGCCATTGTAGCAGCTCTTCATGGTTGGCTGAATCGGATCCAAATATTAGTTCTATTGGCCAAAAGCCAAGCACTGAGGAAAAATCAGAGTTCTCACTTGCATTGCGATCTGGAAGCTGTTCTGAAAAAGGACCAAAGCAGTACATGGAGGATGAGTTCATATGTGTTGATATTCTTCATGAATGTGTTGGTCCAGAAGCAGACCTTTCTTCTCCAGCAGCATTTTATGGGGTATTTGATGGACATGGTGGTGTTGATGCAGCATCATTTACCAGAAAGAACATCCTTAAGTTTATAATTGAAGATTCTCATTTCCCATCTGGGATTAAGAAAGCAGTTAAGAGTGCATTTATAAAGGTTGATCATGCATTAAGAGATGCTAGTGCTCTTGATAGTTCTTCAGGCACCACTGCTCTAGTAGCCCTTGTGCTGGGAAGGGACATGCTAATTGCCAATGCAGGGGATTCTCGTGCTGTATTGGGCAAACGGGGCAGAGCCATTGAACTTTCTAAAGACCATAAACCAAATTGCACTTCTGAGAGATTAAGAATTGAGAAACTGGGTGGTGTCATCTATGATGGATACCTCAATGGCCAACTATCAGTGGCTAGAGCTCTTGGAGATTGGCACATCAAAGGTTCTAAAGGTTCTAAAAGCCCTTTAAGCTCTGAGCCTGAGCTAGAGGAGATTGTGCTGACAGAAGAAGATGAGTTTTTGATAATGGGTTGTGATGGATTATGGGATGTGATGAGTAGCCAGTGTGCTGTTACAATGGTGAGGAGGGAGCTTATGCAGCATAATGATCCCACAAAATGTGCAAAAGTACTTGTTACTGAGGCACTCCAACGCAACACATGTGATAATCTGACAGTTGTGGTGGTTTGTTTCTCCAAAGATCCACCACCAAAAATTGAAATTCCTAGATCACATAGGAGAAGGAGTATTTCTGCTGAAGGCCTTGATCTTCTCAAGGGTGTCTTGAATGGTAGATGA 1161 0.4289 MAQGTDCTSQTVIMPGGGCPKGGNTNSECSMEDQNGDTVGNLNQNIGKPPRDHSVMRHCSSSSWLAESDPNISSIGQKPSTEEKSEFSLALRSGSCSEKGPKQYMEDEFICVDILHECVGPEADLSSPAAFYGVFDGHGGVDAASFTRKNILKFIIEDSHFPSGIKKAVKSAFIKVDHALRDASALDSSSGTTALVALVLGRDMLIANAGDSRAVLGKRGRAIELSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARALGDWHIKGSKGSKSPLSSEPELEEIVLTEEDEFLIMGCDGLWDVMSSQCAVTMVRRELMQHNDPTKCAKVLVTEALQRNTCDNLTVVVVCFSKDPPPKIEIPRSHRRRSISAEGLDLLKGVLNGR. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01110 386 ProSiteProfiles PPM-type phosphatase domain profile. 92 352 IPR001932 -
Seca10g01110 386 SUPERFAMILY PP2C-like 86 353 IPR036457 -
Seca10g01110 386 PANTHER PROTEIN PHOSPHATASE 2C 77 350 IPR015655 GO:0004722|GO:0006470
Seca10g01110 386 FunFam Probable protein phosphatase 2C 22 77 355 - -
Seca10g01110 386 Pfam Protein phosphatase 2C 93 344 IPR001932 -
Seca10g01110 386 MobiDBLite consensus disorder prediction 62 84 - -
Seca10g01110 386 Gene3D - 73 356 IPR036457 -
Seca10g01110 386 CDD PP2Cc 92 352 IPR001932 -
Seca10g01110 386 ProSitePatterns PPM-type phosphatase domain signature. 131 139 IPR000222 GO:0043169
Seca10g01110 386 SMART PP2C_4 82 350 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01110 Seca-Chr10 10673396 10676709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01110 75 384 PP2C-type Phosphatase Gene Family AT3G51470 78.710 7.01e-180 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01110 K14803 - gmx:100786416 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01110 10 10673396 10676709 Seca10g01110 10 10673396 10676709 ECH