Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01107 ATGTCGTGCTCATCTTCATCAGGGTCGGAGGAAGATGATGAGGGATTCGACTCCTATCGGAAAGGAGGCTACCACGCCGTCAGGGTCGCCGATCAGTTCGCCGGCGGCAGGTACATAGCGCAGAGGAAACTGGGTTGGGGTCAATTTTCCACCGTCTGGCTTGCTTATGATACTAACACCTCTTCATATGTTGCTCTGAAGATCCAGAAAAGTGCAGCCCAATTTGTTCAGGCTGCCCTTCATGAGATCAATGTTCTTTCATCCATTGCTGATGGCGATCCATCAAATTCAAAGTTTGTTGTCCAATTGATTGACCACTTTAAGCACACAGGTCCAAATGGACAGCACCTTTGCATGGTCCTTGAGTTTCTTGGTGATAGTTTGCTTCGTTTGATCAGATATAACCGTTACAAAGGTCTTCCACTGAATAAAGTTAGAGAGATTTGCAAATGTGTTCTGATTGGTTTGGATTACTTGCATAGTGAACTTGGTATAATCCACACTGACCTAAAACCTGAAAACATTCTTCTATGTTCAACCATTGATATTGCCAAAGACCCTTTTAAATCTGGACTCTCCCCAATTCTAGAGAGGCCTGAGGGAAACACAAATGGTGGACTTACAAGTCTTATTGAGAAAAGGTTGAAGAGGAAAGCAAGGAGGGCAGTTGCTAAGATATCTGGAAGAACAGCTTCAATAGGAGGAACAGGGGAAGCTGAAAAGTCTGGTAGAAATATTGATGGGATTGATGTGAGATGCAAGATAGTTGATTTTGGAAATGCATGTTGGGCTGATAAGCAATTTGCAGAAGAAATACAGACAAGGCAGTACAGAGCTCCTGAAGTTATACTGAAGGCTGGCTATTCCTTCCCTGTCGACATGTGGTCTTTTGCTTGCATTGCTTTTGAGCTTGCCACCGGAGATATGTTATTCACACCGAAGGGTGGACAAGGTTATAGTGAGGATGAGGATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCCCGGAAGATTGCAACTGCTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGATCTAAAAAGGATCCGAAGGCTAAAATTTTGGCCACTTGACAAATTGCTGGTTGATAGATATAAATTTTCAGTGAATGATGCTCGTGAGTTTTCGGAATTTGTTGTACCACTTCTTGATTTTGCACCAGAGAAACGACCGACTGCAAGACAGTGCCTGCAACACCCATGGTTGAATTGCAAGGAATCAACTCCAAATGAAATGATAAATGAATCTACAATGGAAAAGGTGGATGTTGGAATGAGCAACCTTAAAATCAAGGTGGGAAAGTGA 1338 0.435 MSCSSSSGSEEDDEGFDSYRKGGYHAVRVADQFAGGRYIAQRKLGWGQFSTVWLAYDTNTSSYVALKIQKSAAQFVQAALHEINVLSSIADGDPSNSKFVVQLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIRYNRYKGLPLNKVREICKCVLIGLDYLHSELGIIHTDLKPENILLCSTIDIAKDPFKSGLSPILERPEGNTNGGLTSLIEKRLKRKARRAVAKISGRTASIGGTGEAEKSGRNIDGIDVRCKIVDFGNACWADKQFAEEIQTRQYRAPEVILKAGYSFPVDMWSFACIAFELATGDMLFTPKGGQGYSEDEDHLALMMELLGKMPRKIATAGAQSKDFFDRHGDLKRIRRLKFWPLDKLLVDRYKFSVNDAREFSEFVVPLLDFAPEKRPTARQCLQHPWLNCKESTPNEMINESTMEKVDVGMSNLKIKVGK. 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01107 445 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Seca10g01107 445 FunFam Serine/threonine-protein kinase SRPK 117 413 - -
Seca10g01107 445 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Seca10g01107 445 CDD STKc_SRPK 27 413 - -
Seca10g01107 445 SUPERFAMILY Protein kinase-like (PK-like) 32 415 IPR011009 -
Seca10g01107 445 FunFam Protein kinase superfamily protein 24 123 - -
Seca10g01107 445 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Seca10g01107 445 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01107 445 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01107 445 Pfam Protein kinase domain 252 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01107 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Seca10g01107 445 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01107 445 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 236 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01107 Seca-Chr10 10659593 10663729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01107 4 414 EF-hand Containing Proteins AT5G22840 51.613 3.92e-169 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Seca10g01107 Pkinase 6e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01107 K08832 - gmx:100784192 796.193