Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01101 ATGGGAGGCTTATTGCACTTTTTCGAATTCAATCAGGGGAGGATGGCCAAGAAAGTCCATGCTCATAAGAGACATCATGGCGGCTTGGAAGCTCCTCGAAATAGTATAGATATGCAAGTAGAAACATCTCAGAACTTCTGTTCACAAGGAGAATTACCCTTTCAGTACTATTATCAAGTAGAGGAAGATGGGTCTGAAAATAATCATTATTCAAATGCGGGTTCAATGAAAAAACTGATCAATGAAGAGCTATCCAAACGATCAAGCACCAGACAAAATGCGCCAAGCCTTGTGGCAAGGTTAATGGGGATAGATATGATGCCATTAGACACTAAATCTGTTGCTCCCTCAGATAAAAGAGTAAGTGAAAATATTGGAAAGAAGTTTTCAAACAAGGGAATAAATGGAAGGGGTTCGGTTAGTTGGGAATCTTCCAACTTTAATTCTTCCAGTCATATGGAATTTGATTCATTTTATGAAGACACAGATGATGATGATGGATGGAACCGGAGTTTTGGAGAACCAAGGCCACGAGAACATCCTCAAGAAGAGGAACTCCAAAAATTCAGGAAAGAGTTTGAAGCATATCAAGCAGCAAGGTTTCTGGAATGTTCTAAGGTTGCTGATATTGACAGTGTTTCTAGACGATTGCTTGTTCAGGAGAATCTGAACAAGGAAAAGTTGGCACATAATACAAGTTTACCGAGAGCAGCAACAGGGAAATTTGCTGGGCTTGACACCCCCTTATTCAAAACAGAACTACCTGACAGTGGTCGTTCAGAATATTGTGGTGATACGATGGAGTTAATCCCAGCTATGCAAAGGAAAACCTTTCCTTCAAAGAGCAGAACTCTAAGTAGAGACTTTGAGGAGTCCTTAATGATGAAATCTTGTAACAGATTAGACATATGTTCTTCCCCCCCTCGGATAGTTATCTTGAAGCCTGGTCCTGACAGCATTTGCAACCATGAAGAGAATTGGACCAGTTCATCAGGTACTTTAACAGGGAGAAATAGTATAGAAGATTTTCTTGAGGAGGTGAAAGAGCGTTTGAAATCTGAGCTGCAAGGAAAAACTGTCAAAAAGGGTTCTGTGGTTCGAGGAAGTGAAATTGAGACACTTTACAATAAAAAACCATCTGATCCTAAACTTATAGCCCGTCATATAGTAAAGCAAGTCAGAGAAAGTGTGACTAGAGATACTGACACAAATATGGTCCGCTCAGAATCAACAAGAACATACAAAAGTGAAATGCAGTTCAATGGACCAAGTTTCCCAGAATTTATCAGTAGAGATACCAGGAGGTTCTTGTCAGAGAGGCTAAGTAATATTGTGAAAAGTGAAAGACATGATGACATTCCTGAGAGGAACTCAAGATCACATTCATTAGACAGTCACAGAGTTAGACTCAAGCAGACAGGGGATATTATGAAGTGTGCAAATGAAAGGGAAATTTCAAAAGAGGAAATAGAAATACAAACAGGATCTTTCAGGCATGAATTAGATGACAATATATTGCTCCAGAGGGAGTTGTCTCCCAGGAACCTTGTAAGATCCTTGTCTGCTCCTGTATCAGTATCAGGAACATCATTTGGGAAGCTTCTTCTAGAGGACCGCCACATTTTAACTGGTGCTCATATTAGGAGGAAGCTTGAAGCCGTTGAAACTATGTCTGTTGGTGTTAAAAAACGGAAAAAAGATAGATTTAATATTAGAGAAAGGGTCTCCAATTTTAGATATAGTCTTGCTCTAAGAGGGAAGCTTTTTGGCAAAAGGAGTCAATCAATGGTAGAATCACATGGCAATGAATATGGTCTTGTGGTGAGAGATGTCACAAGTGGACCAACAGTTCTTATGAACTATGGTGAGAGGCATGAGAACTCCACTGAAGTACCTCCTAGTCCTGCATCTGTATGCAGCAGTGTTCATGAAGACTTTTGGAGGCGGACTGAATATTTAAGTCCAATATCAACCCCTGATGTGCCTTCAAGAGACGATATTGTTGTGCCCCAGGTTTTTAGAGATATCAGCTCTGGTTTGAACGAGCTAAGAAGACAACTCAATCAACTTGAATCTGATGTTCCTGAGGACTTCACTACAAAACAGGAGCCTGTTGAGTCTGAATTAGTTCAATTAGAGGATCCAGCAGAATCTTACATAAGAGATCTACTTGTTGCTTCTGGTCTGTACTTTGGTTCATGGGATAAATCCTTATTAAGAGGGGACACATTTGCAAAGCCTATTGGCAACTCTGTTTTTGAAGAAGTGGAAGAATCTCATAAGAAATTGGTCAAGGAGAATGATGAAAGTCCTATAAAGGATCAGAATGAGAATAAGCTAGACCACAAAATTTTGCTTGATTTATTAAATGAGGCACTTTCAGTTGTTCTTGGACCACCTTTGACATTGACTAGATTCAGAAGGAGATTAAGCAACTCTTCCATGTTGCCACCACCTTGTGGGAAGGAACTGTTGAACTCAGTATGGGACATTATCCGTGTTTCTTTATATCCTCCATCTGACATATCTCCTTCTTCACTTGATGGTTTGGTGGCTCAACACTTGAGATGCATCCCCTGGTCTGGACTAATAAATGATGAGATCAATATATTGGAAAGAGAGATAGAATGTCTTATAACTAATGATCTGATTGAAGAACTCACAAAGGATATGCTCTAA 2679 0.3975 MGGLLHFFEFNQGRMAKKVHAHKRHHGGLEAPRNSIDMQVETSQNFCSQGELPFQYYYQVEEDGSENNHYSNAGSMKKLINEELSKRSSTRQNAPSLVARLMGIDMMPLDTKSVAPSDKRVSENIGKKFSNKGINGRGSVSWESSNFNSSSHMEFDSFYEDTDDDDGWNRSFGEPRPREHPQEEELQKFRKEFEAYQAARFLECSKVADIDSVSRRLLVQENLNKEKLAHNTSLPRAATGKFAGLDTPLFKTELPDSGRSEYCGDTMELIPAMQRKTFPSKSRTLSRDFEESLMMKSCNRLDICSSPPRIVILKPGPDSICNHEENWTSSSGTLTGRNSIEDFLEEVKERLKSELQGKTVKKGSVVRGSEIETLYNKKPSDPKLIARHIVKQVRESVTRDTDTNMVRSESTRTYKSEMQFNGPSFPEFISRDTRRFLSERLSNIVKSERHDDIPERNSRSHSLDSHRVRLKQTGDIMKCANEREISKEEIEIQTGSFRHELDDNILLQRELSPRNLVRSLSAPVSVSGTSFGKLLLEDRHILTGAHIRRKLEAVETMSVGVKKRKKDRFNIRERVSNFRYSLALRGKLFGKRSQSMVESHGNEYGLVVRDVTSGPTVLMNYGERHENSTEVPPSPASVCSSVHEDFWRRTEYLSPISTPDVPSRDDIVVPQVFRDISSGLNELRRQLNQLESDVPEDFTTKQEPVESELVQLEDPAESYIRDLLVASGLYFGSWDKSLLRGDTFAKPIGNSVFEEVEESHKKLVKENDESPIKDQNENKLDHKILLDLLNEALSVVLGPPLTLTRFRRRLSNSSMLPPPCGKELLNSVWDIIRVSLYPPSDISPSSLDGLVAQHLRCIPWSGLINDEINILEREIECLITNDLIEELTKDML. 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01101 892 Pfam DUF761-associated sequence motif 92 108 IPR032795 -
Seca10g01101 892 Coils Coil 673 693 - -
Seca10g01101 892 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 891 - -
Seca10g01101 892 Pfam Domain of unknown function (DUF4378) 718 886 IPR025486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01101 Seca-Chr10 10615784 10621958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01101 76 891 TRM (TON1 Recruiting Motif) Superfamily AT2G17550 41.156 6.50e-158 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01101 - - gmx:100779720 1356.27