Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01098 ATGCCGAAAGCCACCATTGATGCCAAAGCTGCCGATAACCGGTTGAAGCGCAAGGGCGCTGGAACAGGAAGGAAGCAGTCGAAGAAAGCTGCAAAGGATCCTAACAAGCCTAAGAGGCCTCCCAGCGCTTTCTTTGTTTTCATGTCTGAGTTCAGAGAACAGTTCAAGAAGGAGAATCCAAACAACAAATCTGTCGCTGTGGTCGGTAAGGCTGGCGGTAACAGATGGAAAGCTATGTCTGATGCCGATAAGGCTCCTTACATTGCTAAGGCAGAAAAGAAGAAAGAGGAGTATGAAAAATCTCTTCGCGCCTACAATAATGGATTGGTGATCTCTCTCTCACTCTCTAATATTTCACCGTTTTATTGA 369 0.4607 MPKATIDAKAADNRLKRKGAGTGRKQSKKAAKDPNKPKRPPSAFFVFMSEFREQFKKENPNNKSVAVVGKAGGNRWKAMSDADKAPYIAKAEKKKEEYEKSLRAYNNGLVISLSLSNISPFY. 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01098 122 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 8 107 IPR031061 -
Seca10g01098 122 MobiDBLite consensus disorder prediction 1 42 - -
Seca10g01098 122 SUPERFAMILY HMG-box 24 106 IPR036910 -
Seca10g01098 122 Coils Coil 88 108 - -
Seca10g01098 122 CDD HMG-box_AtHMGB1-like 38 87 - -
Seca10g01098 122 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Seca10g01098 122 SMART hmgende2 36 107 IPR009071 -
Seca10g01098 122 Gene3D High mobility group box domain 21 111 IPR036910 -
Seca10g01098 122 Pfam HMG (high mobility group) box 37 106 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01098 Seca-Chr10 10580994 10583243 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Seca10g01098 HMG_box 4.2e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01098 K25507 - gmx:100499992 175.252