Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01096 ATGCCGAAAGCCACCACTGATGCCAAAGCTGCCGATAACCGGTTGAAGCGCAAGGGCGCTGGAACTGGAAGAAAGCAGTCGAAGAAAGCTGCAAAGGATCCTAACAAGCCTAAGAGGCCTCCCAGCGCTTTCTTTGTTTTCATGTCTGAGTTCAGAGAACAGTTCAAGAAGGAGAATCCAAACAACAAATCCGTCGCTGTGGTGAGTGACCGGTACGTGATTAAATATAATTCCTTTATTGTTGTTCAGGACAAGGCTCCTTACATTGCCAAGGCAGAAAAGAAGAAAGAAGAGTATGAAAAATCTCTTCGCGCCTACAATAATGGATTGGCTGAGGGCAAAAACCCCTCGGAGGAAGAAGGGTCTGACAAGTCAAAGTCTGAAGTCAATGATGAGGAAGACGATGATGAAGATGACGACGAGTAA 426 0.4601 MPKATTDAKAADNRLKRKGAGTGRKQSKKAAKDPNKPKRPPSAFFVFMSEFREQFKKENPNNKSVAVVSDRYVIKYNSFIVVQDKAPYIAKAEKKKEEYEKSLRAYNNGLAEGKNPSEEEGSDKSKSEVNDEEDDDEDDDE. 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01096 141 Coils Coil 89 109 - -
Seca10g01096 141 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 5 138 IPR031061 -
Seca10g01096 141 SUPERFAMILY HMG-box 28 111 IPR036910 -
Seca10g01096 141 MobiDBLite consensus disorder prediction 1 43 - -
Seca10g01096 141 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 107 IPR009071 -
Seca10g01096 141 Pfam HMG (high mobility group) box 37 107 IPR009071 -
Seca10g01096 141 SMART hmgende2 36 108 IPR009071 -
Seca10g01096 141 MobiDBLite consensus disorder prediction 107 141 - -
Seca10g01096 141 Gene3D High mobility group box domain 21 131 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01096 Seca-Chr10 10561618 10563833 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Seca10g01096 HMG_box 4.5e-14 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01096 K25507 - gmx:100499992 164.081