Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01092 ATGGATTCTACTTTGCTGACCAAACTACTGGTCTTCAACAACACCCTTCAACGAGAGTTGATTAGGAGCTTGCATGTGTACCGCCAATGGGATGGGGAGGAAAGGGAAGTTGAAAGAGAGTTTGTGTTTTCAGAGAGTGGCTCCTATGCGGAAATGCAGGCTACCCCAATTCTTAGTTTGCTGAAAATTCCATTTTCTGAAGTCTGTGAGGGGTTCCAGAATGGAGTGTGGCTTTGTATCTTTGCGTTTCATGCCGATCACACTCCTCAATTTCCCCCCATTCCACCCCTTTTGTTGCTCACCAGAAACCCAAAGCTTCATATGATTCCAAACTTGCTTAATGATCTTCATATGATATACAAGTTGGACTGGAAGGAGGAAAACAAAGATATACCGCAAGACTCTACAGGGGAAGAATGGCAAGGAAACAACAATGATTGCCAACAATCTCCAAAAGTCTCGCCTGTGTTGGATCTGGATCTCAATTGTCTTCCTTATGAAGAAGAAGACGAACCTGAGTTACCGGACAACGAGATAGAGGCTGGATGCTTACAAAGTTCAGAGTCAATGCTCTCAGGTATCGAAAACACGGTTGGTTTGGGAGGAAAGAAAAAGAGGGCTCCCAGTGACCATGTAGCGAAAATTGCTTTTTCAGATTTGGTCAAGTACTTTGATATGCCAATTGTAGAAGCATCAAGACATCTAAATGTTGGCCTTACTGTTCTCAAGAGAAAATGCAGAGAATTTGGTATTCCCCGGTGGCCTCATAGGAAGATCAAATCACTTGACAGTCTCATTCATGATCTTCAGGAAGTGGCAAAATACCCAGAATTGGAGGATGAAGCTGCAGCCATGGCAGTGACAAGCAGGCAAAAGATGTTGGAGAATGAAAAGGAAAACATAGAGAAGAAACCCTTCATGGACATACAAAGTGAGACCAAGAGATTCAGGCAGGATGTTTTCAAGAGAAGGCACAGAGCTAGAGCTATTGAGAAACAAAGTTCTACAGTATCCAACACTTAA 1023 0.4311 MDSTLLTKLLVFNNTLQRELIRSLHVYRQWDGEEREVEREFVFSESGSYAEMQATPILSLLKIPFSEVCEGFQNGVWLCIFAFHADHTPQFPPIPPLLLLTRNPKLHMIPNLLNDLHMIYKLDWKEENKDIPQDSTGEEWQGNNNDCQQSPKVSPVLDLDLNCLPYEEEDEPELPDNEIEAGCLQSSESMLSGIENTVGLGGKKKRAPSDHVAKIAFSDLVKYFDMPIVEASRHLNVGLTVLKRKCREFGIPRWPHRKIKSLDSLIHDLQEVAKYPELEDEAAAMAVTSRQKMLENEKENIEKKPFMDIQSETKRFRQDVFKRRHRARAIEKQSSTVSNT. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01092 340 Coils Coil 284 304 - -
Seca10g01092 340 Pfam RWP-RK domain 215 262 IPR003035 -
Seca10g01092 340 MobiDBLite consensus disorder prediction 131 151 - -
Seca10g01092 340 ProSiteProfiles RWP-RK domain profile. 197 282 IPR003035 -
Seca10g01092 340 PANTHER PROTEIN RKD4 75 333 IPR044607 GO:0003700
Seca10g01092 340 MobiDBLite consensus disorder prediction 135 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01092 Seca-Chr10 10526961 10531729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01092 19 340 AtRKD Transcription Factor Family AT4G35590 47.059 1.95e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Seca10g01092 RWP-RK 7.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01092 - - gmx:113001653 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01092 10 10526961 10531729 Seca10g01092 10 10526961 10531729 ECH