Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01087 ATGAAATCTCCTAGGCAAGTGTTGGAGGAATTAAGTGCTGGCGATCATGATGATCATCATGATGGAGGTGGTAATAATAGCGCCAGTCCTGGTGGTGGTTCTGTTGTGGCGGTGGCGGTGGGAGTGGGTGGTGGTGGTGGTTCGGTGGTGGTGGCGGAAGGTGCGGCAGTTGTGAGGAAGAGAAAGAGTCCTGAAGTGAAAGACCCTCCTCGTGGTGTACCAACTTGCCCTGTCTGTCAGAAACAGTTTTCCTCCTGGAAGGGCGCGTTTGGTCACATGCGCAAACACCCTGAACGTGAATATCGCGGTTTCTATCACCCTCCTGTTTTCAACTCCACTTCTTCTTCACAGCAACAGCCACCTAATGATGATAATAATAATAACAAGGGAGAGAGAAATAAAGGGAAGGAAAAGAGTGGGGAGAAAGAGAAAGGAGGGGGAGGATCACCAATTCGAGGGCTTGTATTTGATCTGAACCAACCAATAGAGGGAGCGGGATCCTCTTCTGCTGCTGCTGTTGCTGAGGGGAATAATGAAGAAGCACAAGCACCTGTTCATGATGCTGAAGAAGAAGATGTTGTTAATGAGGGGGAGAGGAAATTAAGGTTATTTGACTTGAATGAGATGCCAACCGCTGAAGATGATGATGATCATCATGATATATGA 666 0.479 MKSPRQVLEELSAGDHDDHHDGGGNNSASPGGGSVVAVAVGVGGGGGSVVVAEGAAVVRKRKSPEVKDPPRGVPTCPVCQKQFSSWKGAFGHMRKHPEREYRGFYHPPVFNSTSSSQQQPPNDDNNNNKGERNKGKEKSGEKEKGGGGSPIRGLVFDLNQPIEGAGSSSAAAVAEGNNEEAQAPVHDAEEEDVVNEGERKLRLFDLNEMPTAEDDDDHHDI. 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01087 221 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 58 132 - -
Seca10g01087 221 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Seca10g01087 221 MobiDBLite consensus disorder prediction 108 126 - -
Seca10g01087 221 MobiDBLite consensus disorder prediction 57 78 - -
Seca10g01087 221 MobiDBLite consensus disorder prediction 127 145 - -
Seca10g01087 221 MobiDBLite consensus disorder prediction 98 221 - -
Seca10g01087 221 MobiDBLite consensus disorder prediction 1 23 - -
Seca10g01087 221 MobiDBLite consensus disorder prediction 1 35 - -
Seca10g01087 221 MobiDBLite consensus disorder prediction 182 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01087 Seca-Chr10 10481805 10482634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01087 70 119 C2H2 Transcription Factor Family AT4G35280 45.098 2.60e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca10g01087 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01087 - - gsj:114373909 124.405