Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01086 ATGGGAGGTGACGCTGCAGCTGAGGGTGTGACGGAGCCTAAGGCCGCTGATGGAGGAGTCACCATCAACATTCGCTGCTCCAATGGGTCTAAGTTTTCTGTTCAGATTAATCTCGAATCCCTCGTCGGATCCTTCAAGGAGGTCGTCGCTCGGAACTGTGACATCCCCGCCGATCAACAGCGTCTGATTTACAAGGGTCGGATCCTCAAGGATGATCAAACCCTGCAAAGCTACGGTTTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGCTTTGCACCTTCTAATGCAACCAGTGGGACTAATAATAATGGTGCCAATACCACAACAACTAATACGAGAGGTGCTAGTGCTAATGAGGGTGGTGGTTTAGGAGGGCCTGGAATGGGAGCTTCACTGTTCCCGGGACTAGGTACCAATGGGATGGGGGGCAGTGGCCTCAATGGCTTATTTGGAGCGGGCCTTCCAGATCTTGAACAAATGCAGCAACCATTTTTATCAAATCCCAATTTAGTGAGAGAAATAATGAATACACCTGCTATGCAGAATTTAATAAATAATCCTGATATAGTGCGGAATCTTATAATGAATAACCCACAGATGCAAGAGCTCATGGATAGAAACCCTGAGCTGGCACACATACTAAATGATCCCAGCACTCTTCGCCAGACACTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGGAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCAACCACGATGGCTGGTCATACAGGAAGTGATAGTGCAGTCAGGAATCAATCAACTAATCCCTCAACTACTAGTTCTGAAGCAACTTCCCCTGTACCCAATACTAACCCGCTTCCTAATCCTTGGTCCTCTACTGGAACTGGAGGTACCCAAAGTAATACCAGAAGGTCAACTACTGGTGGGGATGCTCGACAGCAGACACCCACTCCCACTGGCTTAGGCGGGCTTGGTCTGCCAGATCTTGAAGGCATGTTGGGTGGTACGCCAGATGCTGCTTTATTGACCCAACTAATGCAAAATCCAGCTATTTCACAGATGATGCAAAGTATCCTTTCCAACCCACAAACTATGAATCAGATTCTTGGTTTCAATGCTGAGCAGCGTGGAATGCCTGATCTAAATTCTCTGAGAGAAGTGATGCAAAACCCAGAATTTCTTCGCCTGTTCTCCTCACCTGAAACTCTGCAGCAACTTTTGTCTTTCCAGCAAGCTCTTCTTTCTCAGCTTGGTCAGCAACAATCAACACAGGAACCAGGTCAAACAGGTGGAGGCACTGGATCGATGAACAACTTGGGACTGGAGATGTTATCAAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAACAGATCAAATGAGCCCCCAGAGCAATTGTATGCCACCCAACTTTCCCAGCTTCAAGAGATGGGGTTCTTTGACACGCAAGAGAACATAAGGGCTCTTATTGCTACATCAGGGAATGTTCATGCAGCAGTTGAGCGGCTTTTGGGGAACTCTGGACAGTAG 1608 0.472 MGGDAAAEGVTEPKAADGGVTINIRCSNGSKFSVQINLESLVGSFKEVVARNCDIPADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPSNATSGTNNNGANTTTTNTRGASANEGGGLGGPGMGASLFPGLGTNGMGGSGLNGLFGAGLPDLEQMQQPFLSNPNLVREIMNTPAMQNLINNPDIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGHTGSDSAVRNQSTNPSTTSSEATSPVPNTNPLPNPWSSTGTGGTQSNTRRSTTGGDARQQTPTPTGLGGLGLPDLEGMLGGTPDAALLTQLMQNPAISQMMQSILSNPQTMNQILGFNAEQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLLSFQQALLSQLGQQQSTQEPGQTGGGTGSMNNLGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ. 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01086 535 MobiDBLite consensus disorder prediction 94 118 - -
Seca10g01086 535 Gene3D - 9 105 - -
Seca10g01086 535 Gene3D - 475 535 - -
Seca10g01086 535 CDD UBA_PLICs 493 531 - -
Seca10g01086 535 MobiDBLite consensus disorder prediction 440 461 - -
Seca10g01086 535 FunFam Ubiquitin domain-containing protein DSK2b 17 103 - -
Seca10g01086 535 SUPERFAMILY UBA-like 489 531 IPR009060 GO:0005515
Seca10g01086 535 MobiDBLite consensus disorder prediction 274 355 - -
Seca10g01086 535 FunFam Ubiquitin domain-containing protein DSK2b 195 251 - -
Seca10g01086 535 ProSiteProfiles Ubiquitin domain profile. 20 89 IPR000626 GO:0005515
Seca10g01086 535 CDD Ubl_Dsk2p_like 20 92 - -
Seca10g01086 535 MobiDBLite consensus disorder prediction 274 343 - -
Seca10g01086 535 FunFam Ubiquitin domain-containing protein DSK2b 476 534 - -
Seca10g01086 535 PANTHER UBIQUILIN 15 530 IPR015496 -
Seca10g01086 535 SMART CBM 394 429 IPR006636 -
Seca10g01086 535 SMART CBM 340 391 IPR006636 -
Seca10g01086 535 SMART CBM 198 237 IPR006636 -
Seca10g01086 535 SMART CBM 148 185 IPR006636 -
Seca10g01086 535 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 487 532 IPR015940 -
Seca10g01086 535 Gene3D - 193 251 - -
Seca10g01086 535 Pfam UBA/TS-N domain 493 529 IPR015940 -
Seca10g01086 535 SUPERFAMILY Ubiquitin-like 13 105 IPR029071 -
Seca10g01086 535 SMART ubq_7 20 91 IPR000626 GO:0005515
Seca10g01086 535 Pfam Ubiquitin family 22 89 IPR000626 GO:0005515
Seca10g01086 535 SMART uba_6 493 531 IPR015940 -
Seca10g01086 535 MobiDBLite consensus disorder prediction 94 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01086 Seca-Chr10 10427608 10432597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01086 20 89 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 7.64e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01086 K04523 - gmx:100797539 820.076