Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01083 ATGCAGAGTACTAGCTGCGTCTCACCAAATTATATGGCACAGCAATTTGACATCAATGAAAGGATGAGGGCTATACTGATTGACTGGCTTATTGAGGTGCACGACAAATTTGACCTCATGCACGAGACATTGTTTCTAACAATTAATCTTATAGATAGATTTTTGGCTAAGCAATCAGTGGTAAGAAAGAAGCTTCAGTTGGTTGGTCTAGTTGCCATGCTTCTGGCATGCAAGTATGAGGAAGTTTCAGTACCTGTGGTTGGGGATTTGATTCTTATATCAGACAAAGCATACACAAGGAAAGAAGTTCTGGAAATGGAGAAGTTGATGGTCAATACATTGCAGTTTAACATGTCTGTGCCAACAGTTTATGTTTTCATGAAAAGGTTCCTAAAGGCAGCTCAAGCAGATAGGAAACTTGAGGCACTAGCATTCTTCTTGGTAGAATTATCTCTAGTAGAATATGAGATGCTGAAGTTCCCTCCATCTCAGCTAGCAGCAGCTGCAGTCTATACAGCTCAATGCACTATCTATGGTTTCAAACAGTGGAGTAAGACATGTGAATGGCACACTAACTACTCAGAAAATCAACTATTAGAGTGCTCTAGTTTAATGGTTGATTTTCACCAGAAGGCTGGGACAGGGAAACTGACAGGGGTGCATAGGAAGTACTGCTCATCTAAATTTAACTATACTGCAAAATGTGAACCAGCACGTTTTCTTCTGGAGAACCCATTGTAA 741 0.4035 MQSTSCVSPNYMAQQFDINERMRAILIDWLIEVHDKFDLMHETLFLTINLIDRFLAKQSVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMEKLMVNTLQFNMSVPTVYVFMKRFLKAAQADRKLEALAFFLVELSLVEYEMLKFPPSQLAAAAVYTAQCTIYGFKQWSKTCEWHTNYSENQLLECSSLMVDFHQKAGTGKLTGVHRKYCSSKFNYTAKCEPARFLLENPL. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01083 246 SUPERFAMILY Cyclin-like 120 238 IPR036915 -
Seca10g01083 246 Gene3D - 3 233 - -
Seca10g01083 246 CDD CYCLIN_AtCycB-like_rpt2 121 237 - -
Seca10g01083 246 SMART Cyclin_C_2 121 238 IPR004367 -
Seca10g01083 246 Pfam Cyclin, C-terminal domain 121 236 IPR004367 -
Seca10g01083 246 PANTHER CYCLINS 5 211 IPR039361 -
Seca10g01083 246 PIRSF Cyclin_A_B_D_E 1 246 IPR046965 GO:0016538|GO:0044772
Seca10g01083 246 Gene3D - 7 119 - -
Seca10g01083 246 SMART cyclin_7 125 207 IPR013763 -
Seca10g01083 246 SMART cyclin_7 28 112 IPR013763 -
Seca10g01083 246 Pfam Cyclin, N-terminal domain 4 119 IPR006671 -
Seca10g01083 246 SUPERFAMILY Cyclin-like 5 118 IPR036915 -
Seca10g01083 246 FunFam G2/mitotic-specific cyclin-1 108 233 - -
Seca10g01083 246 ProSitePatterns Cyclins signature. 23 54 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01083 Seca-Chr10 10390674 10392674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01083 5 242 Core Cell Cycle Gene Families AT1G20610 73.950 8.14e-132 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01083 K21777 - gmx:100798068 461.84