Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01060 ATGGGTGTGACACCATATTTTGACAGGCCCATGCACGAGATTACCTTTTCAACAGTTGACAAGCCTAAACTCCTTAGTCAGTTAACTTCAATACTTGGTGAGATTGGACTGAATATTCAAGAAGCCCATGCATTTTCCACCTCTGATGGGTTTTCTCTGGATGTCTTTGTTGTTGAAGGATGGCCTAATGAGGAAACTGAGGAGCTTAAAGGTGTATTGGAAAAGGAAATTTTGAGGGTTAAGGAACAATATCCGTCAAATCAGGGCATACTTTCTGCTTCCAATGAACAATACCAGACAAAGATGGAACCCTCCCCTCATTGCATACAAATACCATCCGATGGAGCTGATGTCTGGGAAATTGATCCCAACCAGCTGAAATATGAAAACAAAGTTGGCTCTGGGTCATTCGGTGACTTGTACAGAGGTACATATTGCAGTCAAGATGTGGCTATCAAAATTCTTAAGCCCGAGCGCATAAGTACAGATATGCTGAGAGAGTTTGCACAGGAAGTTTATATCATGAGGAAGATTCGACACAAGAATGTTGTTCAGTTCATTGGTGCATGTACTCGGCCACCAAATCTTTGTATTGTTACAGAGTTCATGTCTAGAGGAAGCTTATATGACTTTCTGCACAAACAAAGGGGTGTATTTAAGCTTCCATCTTTACTAAAAGTAGCGATTGATGTTTCCAAGGGAATGAACTATTTGCACCAAAATAATATAATCCACAGGGACCTCAAGACTGCCAATCTTCTGATGGATGAAAATGAATTGGTCAAGGTTGCTGATTTTGGGGTTGCCAGAGTCCAAACTCAGTCTGGAGTGATGACTGCTGAAACTGGCACATACCGCTGGATGGCCCCTGAGGTCATTGAACACAAACCATATGACCAGAAGGCGGATGTTTTCAGTTTTGGAATAGCTCTTTGGGAGCTTTTAACCGGAGAGCTGCCTTACTCATACTTGACTCCATTACAAGCAGCAGTTGGCGTGGTGCAGAAGGGCCTACGGCCTACAATTCCCAAAAATACACATCCAAGACTTTCTGAACTGCTCCAGCGGTGCTGGCAACAAGATCCAAAGGAGAGACCGGCTTTCTGTGAAATAATTGAAATTCTTCAGAACATAGCAAAAGAGGTCAACGATGACAAAACAGATCGACACAATAAGTCATCCCATGGCTTTCTCTCAGCACTTAGACGTGCCCATCACTGA 1221 0.43 MGVTPYFDRPMHEITFSTVDKPKLLSQLTSILGEIGLNIQEAHAFSTSDGFSLDVFVVEGWPNEETEELKGVLEKEILRVKEQYPSNQGILSASNEQYQTKMEPSPHCIQIPSDGADVWEIDPNQLKYENKVGSGSFGDLYRGTYCSQDVAIKILKPERISTDMLREFAQEVYIMRKIRHKNVVQFIGACTRPPNLCIVTEFMSRGSLYDFLHKQRGVFKLPSLLKVAIDVSKGMNYLHQNNIIHRDLKTANLLMDENELVKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDQKADVFSFGIALWELLTGELPYSYLTPLQAAVGVVQKGLRPTIPKNTHPRLSELLQRCWQQDPKERPAFCEIIEILQNIAKEVNDDKTDRHNKSSHGFLSALRRAHH. 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01060 406 Gene3D Phosphorylase Kinase; domain 1 116 204 - -
Seca10g01060 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Seca10g01060 406 FunFam Serine/threonine-protein kinase isoform 1 116 204 - -
Seca10g01060 406 FunFam serine/threonine-protein kinase HT1 205 396 - -
Seca10g01060 406 Pfam Protein tyrosine and serine/threonine kinase 126 375 IPR001245 GO:0004672|GO:0006468
Seca10g01060 406 SUPERFAMILY ACT-like 11 75 IPR045865 -
Seca10g01060 406 ProSiteProfiles ACT domain profile. 13 88 IPR002912 -
Seca10g01060 406 SUPERFAMILY Protein kinase-like (PK-like) 100 375 IPR011009 -
Seca10g01060 406 ProSitePatterns Protein kinases ATP-binding region signature. 132 153 IPR017441 GO:0005524
Seca10g01060 406 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 83 381 - -
Seca10g01060 406 SMART serkin_6 126 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01060 406 Coils Coil 63 83 - -
Seca10g01060 406 PRINTS Tyrosine kinase catalytic domain signature 302 324 IPR001245 GO:0004672|GO:0006468
Seca10g01060 406 PRINTS Tyrosine kinase catalytic domain signature 283 293 IPR001245 GO:0004672|GO:0006468
Seca10g01060 406 PRINTS Tyrosine kinase catalytic domain signature 200 213 IPR001245 GO:0004672|GO:0006468
Seca10g01060 406 PRINTS Tyrosine kinase catalytic domain signature 237 255 IPR001245 GO:0004672|GO:0006468
Seca10g01060 406 PRINTS Tyrosine kinase catalytic domain signature 346 368 IPR001245 GO:0004672|GO:0006468
Seca10g01060 406 Gene3D Transferase(Phosphotransferase) domain 1 205 402 - -
Seca10g01060 406 CDD STKc_MAP3K-like 132 375 - -
Seca10g01060 406 MobiDBLite consensus disorder prediction 385 406 - -
Seca10g01060 406 CDD ACT_TyrKc 11 78 - -
Seca10g01060 406 ProSiteProfiles Protein kinase domain profile. 126 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01060 Seca-Chr10 10173742 10184033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01060 9 405 MAP Kinase Kinase Kinase AT4G35780 74.055 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca10g01060 PK_Tyr_Ser-Thr 2.8e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01060 - - gmx:100816767 752.666