Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca10g01057 | ATGGCTAATACTCATATTATTTTTCAGGATAAATGGCTTCCTCTACACACTCTTGCTGCATGTGGGGAATTTTACCTTTTAGATTCCTTATTGAAGCATAATGTTGATATTAATGCTGTGGATAAGGATGGTTTGACCGCTCTTCACAAAGCTATAATTGGCAAAAAGCAGGCCATAACCAATTATCTCCTCAGAAACTCTGCTAATCCCTTTGTACAGGATAAAGATGGGGCCACCTTGATGCACTATGCTGTAGAAACAGCTTCTGTCCCAGCAATTAAAGTACTCTTGTTGTATAACGTGGATATAAATCTTCAGGACAATGATGGCTGGACACCACTACATCTTGCTGTTCAAACTCAGAGAACAGATATAGTGAGGCTTCTTCTGATTAAAGGTGCAGATAAGACATTAAAAAACAAGGATGGTTTAACTCCACTTGACCTATGCCTTTACTGTGGTCATAGTCTAAGAACATATGAGCTAATCAAGTTGTTGAAGCAGCCTCAAAGGCGTGTTACAAGTGTATGA | 531 | 0.3898 | MANTHIIFQDKWLPLHTLAACGEFYLLDSLLKHNVDINAVDKDGLTALHKAIIGKKQAITNYLLRNSANPFVQDKDGATLMHYAVETASVPAIKVLLLYNVDINLQDNDGWTPLHLAVQTQRTDIVRLLLIKGADKTLKNKDGLTPLDLCLYCGHSLRTYELIKLLKQPQRRVTSV. | 177 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca10g01057 | 176 | ProSiteProfiles | Ankyrin repeat region circular profile. | 109 | 141 | - | - | |
| Seca10g01057 | 176 | ProSiteProfiles | Ankyrin repeat profile. | 76 | 108 | IPR002110 | GO:0005515 | |
| Seca10g01057 | 176 | Pfam | Ankyrin repeats (3 copies) | 76 | 140 | IPR002110 | GO:0005515 | |
| Seca10g01057 | 176 | ProSiteProfiles | Ankyrin repeat region circular profile. | 76 | 108 | - | - | |
| Seca10g01057 | 176 | ProSiteProfiles | Ankyrin repeat profile. | 43 | 75 | IPR002110 | GO:0005515 | |
| Seca10g01057 | 176 | FunFam | Ankyrin repeat domain-containing protein, chloroplastic | 1 | 80 | - | - | |
| Seca10g01057 | 176 | FunFam | Ankyrin repeat domain-containing protein, chloroplastic | 81 | 174 | - | - | |
| Seca10g01057 | 176 | Gene3D | - | 2 | 78 | IPR036770 | - | |
| Seca10g01057 | 176 | ProSiteProfiles | Ankyrin repeat profile. | 10 | 42 | IPR002110 | GO:0005515 | |
| Seca10g01057 | 176 | Gene3D | - | 79 | 174 | IPR036770 | - | |
| Seca10g01057 | 176 | ProSiteProfiles | Ankyrin repeat profile. | 109 | 141 | IPR002110 | GO:0005515 | |
| Seca10g01057 | 176 | SMART | ANK_2a | 142 | 171 | IPR002110 | GO:0005515 | |
| Seca10g01057 | 176 | SMART | ANK_2a | 43 | 72 | IPR002110 | GO:0005515 | |
| Seca10g01057 | 176 | SMART | ANK_2a | 76 | 105 | IPR002110 | GO:0005515 | |
| Seca10g01057 | 176 | SMART | ANK_2a | 109 | 138 | IPR002110 | GO:0005515 | |
| Seca10g01057 | 176 | SMART | ANK_2a | 10 | 39 | IPR002110 | GO:0005515 | |
| Seca10g01057 | 176 | Pfam | Ankyrin repeats (many copies) | 14 | 56 | IPR002110 | GO:0005515 | |
| Seca10g01057 | 176 | PANTHER | ANKYRIN REPEAT FAMILY PROTEIN | 14 | 170 | - | - | |
| Seca10g01057 | 176 | SUPERFAMILY | Ankyrin repeat | 4 | 156 | IPR036770 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca10g01057 | Seca-Chr10 | 10139060 | 10141435 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca10g01057 | 9 | 173 | Ion Channels | AT2G25600 | 33.333 | 6.93e-15 | 69.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca10g01057 | - | - | lja:Lj0g3v0101779.1 | 298.516 |