Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01039 ATGACTCTCAAAGGATTGGTATCACTTGTCTTCAATTTAATTGGTCTAATACAGAGACCAAGGAACAAGGATGCCCCTTTACCTTACCTGCTATCAGATCCTATTGTCACACAGAAGATCAAGCAGCAACAATCATCTGAAGCCAATTTTATGGAGAATAGTGAGGGTGGTTGGTGTTGCGTGTGCTTGTCAAGATTAAAGGACAAAGATGAAATTCGAGTCCTTCCTTGCTTGCATAAGTTTCATAAGATTTGTGTAAATAGATGGCTAAAGGGTCATCACAAAACATGTCCACTCTGTCGTTTCTCAATGGGAGCTGAAGAGAAGTCTCATCGTGCAGAAATGTTCACTGAAGAGATGTTAATATGGTTTTCTTCTTTCCATATAGCTGGTATGTAA 399 0.3935 MTLKGLVSLVFNLIGLIQRPRNKDAPLPYLLSDPIVTQKIKQQQSSEANFMENSEGGWCCVCLSRLKDKDEIRVLPCLHKFHKICVNRWLKGHHKTCPLCRFSMGAEEKSHRAEMFTEEMLIWFSSFHIAGM. 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01039 132 Pfam Ring finger domain 59 101 IPR001841 -
Seca10g01039 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 107 IPR013083 -
Seca10g01039 132 SMART ring_2 59 100 IPR001841 -
Seca10g01039 132 ProSiteProfiles Zinc finger RING-type profile. 59 101 IPR001841 -
Seca10g01039 132 CDD RING-H2_PA-TM-RING 59 101 - -
Seca10g01039 132 PANTHER TARGET OF ERK KINASE MPK-1 38 109 - -
Seca10g01039 132 SUPERFAMILY RING/U-box 58 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01039 Seca-Chr10 9863673 9864071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01039 39 105 C3H Transcription Factor Family AT1G80400 35.714 8.61e-14 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01039 - - gmx:100809233 208.379