Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00999 ATGCAGGTACTGCTTGCTCTGCATGGCAACATGGGTCGACTAATTACATCCAAGTGGTTACAGAAAAATGGGGTGTGCACAATGGAAGCTTCTGAATGGAATGGACTAACTCAAATTTTGAGACAACTCTTTAATGCAAGAAGTTCAATCCATAATAATGACTTTGATGCACATTATCCAGTAAATGAGGGATTGAAGCCTAAACTACTCACCATAAAAGATATGAGGAACCCTGTTTTTGTCATTGTTGTTGACATTGGACTACTTGATTTGAGCACAGATATATGGAAGGAACAGCTTAACTTCCTTCATAGGTACTTTGGGAGAGCAAAGTTTGTGTGGATGCTAAATCATGACACCTCAAATACCATAAAGATGGAGCTCCGTAGGAAAGGGCATGTACTAATGGTCAACAAACCCCTTTACAAAGCAAAAATGATTCACATTTTGGAAGCTGTCATAAAAGAGAGAAATCTTGAACTACAAAAGAAAAACATGACTGCTCCAAGAAGCACAATGAAAGAGGGTGATTTGCATGAGTTTCTTGAGATTGATTCTACTCATTTTGATGCTGCTAGCTCTGATGATTCTGACATATCTGAAATGGGTGGTTGTTCTAATCCTGATAGTGCCAATGGAGATAAACCAATTGTAAAGACAGCCATATCCCATCCATCATCACCATACCAGATGAGTAACTGCTCAGTTAGATTAACCAATGAAAATGAATATTTGGAAGAGAATAATATGAGGAAAGAAGAATCTTGTCAGAGTAGCCCCAATTCCAATTATACCACAGAAGACACCCAACCTAAACCACTGCCAACTAAAGAACCATCCTTTCCAACAGAAGCACAAGATGAAGAATCTGAATGTGAGGAAACACATAGGGTTACCAGCTCAAGTAAAGCAGTAAATGACAAGAAATCTCTTGAGGGCCTAAAGATTTTGCTTGCAGAAGATACACCAGTACTTCAAAGGGTTGCAACTATAATGCTTGAAAAAATGGGAGCTGCTGTTGTTGCTGTAGGTGATGGACAACAAGCAGTAGATGCTCTCAATTGCATGGTAGGAGCTGAAGATTTTAGAAGGGAGTCTCTCCAGAAGGAAAGAAACACAAGATCTCAAACAGAGATTTTTACTTGCCATCCATATGACTTAATCCTAATGGATTGTCAGATGCCAAAGATGGATGGATACGAGGCAACAAAAGCAATAAGGAAATCAGAGGAAGGAACAGGGTTGCACATTCCCATTGTTGCTCTAACAGCCCATGCAATGTCATGTGATGAAGCCAAATGTTTGCAGGTGGGCATGGATGCTTACTTAACAAAGCCAATTGACTTCAAGTTGATGGTGTCCACCATTCTTTCACTCACTAAAACAACATCTTGA 1395 0.3957 MQVLLALHGNMGRLITSKWLQKNGVCTMEASEWNGLTQILRQLFNARSSIHNNDFDAHYPVNEGLKPKLLTIKDMRNPVFVIVVDIGLLDLSTDIWKEQLNFLHRYFGRAKFVWMLNHDTSNTIKMELRRKGHVLMVNKPLYKAKMIHILEAVIKERNLELQKKNMTAPRSTMKEGDLHEFLEIDSTHFDAASSDDSDISEMGGCSNPDSANGDKPIVKTAISHPSSPYQMSNCSVRLTNENEYLEENNMRKEESCQSSPNSNYTTEDTQPKPLPTKEPSFPTEAQDEESECEETHRVTSSSKAVNDKKSLEGLKILLAEDTPVLQRVATIMLEKMGAAVVAVGDGQQAVDALNCMVGAEDFRRESLQKERNTRSQTEIFTCHPYDLILMDCQMPKMDGYEATKAIRKSEEGTGLHIPIVALTAHAMSCDEAKCLQVGMDAYLTKPIDFKLMVSTILSLTKTTS. 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00999 464 MobiDBLite consensus disorder prediction 249 304 - -
Seca10g00999 464 PANTHER HYBRID SIGNAL TRANSDUCTION HISTIDINE KINASE J 99 461 - -
Seca10g00999 464 MobiDBLite consensus disorder prediction 290 304 - -
Seca10g00999 464 MobiDBLite consensus disorder prediction 254 273 - -
Seca10g00999 464 SUPERFAMILY CheY-like 312 460 IPR011006 -
Seca10g00999 464 CDD REC_hyHK_CKI1_RcsC-like 316 456 - -
Seca10g00999 464 MobiDBLite consensus disorder prediction 193 212 - -
Seca10g00999 464 SMART REC_2 314 456 IPR001789 GO:0000160
Seca10g00999 464 Gene3D - 291 462 - -
Seca10g00999 464 Pfam Response regulator receiver domain 373 455 IPR001789 GO:0000160
Seca10g00999 464 ProSiteProfiles Response regulatory domain profile. 315 460 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00999 Seca-Chr10 9585452 9587573 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00999 3 464 Histidine Kinase Gene Family AT2G17820 52.119 4.70e-137 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca10g00999 Response_reg 6.7e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00999 - - gmx:100814068 744.191