Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00998 ATGGCAGAAAACAAAGACGAAACTTGTTCTGAAAGATCTCTATGTTCACGAGGTTCAATGAGTAACAAGTTCAGATACGTATTTGATAGATTATGCGGTTATTCCACTTTTTGGAAGAAAAATAGCACACCAAAAGGTCGAAGAATTTTCCACAGAGATGTGGAGAAAGAAGAATTCCAGTATGCCAGTACTCATTGTCTCTCATCCTACTACAGTGTCTTTGTTGTTCGATTAGCAATCATGGTCATGTTAGCCATCTTGATAGGGCTTCTCACTATACTAACATGGCACTTCACCAAGATTTATACAAGAAAATCACTTAATAGCTTGGCATATGGTCTGCGTTATGAACTTCTGCAACGTCCCATCTTGCGTATGTGGAACATTTTGAACTCTACTTCTGAAATTACAACAGCTCAGGTCAAGTTATCTGAGTATGTTATCAGACGTTACAGCAACCCTGCCACTCAAGCAGAGCAAGTTGAGCTGTATGAAGCGATGAGGGCTGTAACATGGGCACTTTTTGCTAGTAGGAAAGCTCTCAACTCAATAACTATCAATTATAAGAATGGATTTGTTCAAGCATTCCATAGAGATCTTAAGGACAACAACACATTTTACATCTACTCTGATCTTTCTAATTACTCCATGGTTGCCAGCAATTCTAATGAGATCAGTTCCCTTTCAACTCATCAAGCTTGGGATGACAAAGCCATTCATGGTAACTTTTCTGCAATTTGGTACCGTGAACCACTTGATCCTGTCAGTGGTGAGAAGATTGGAAAAGCTATGCAAATTGCACCTGAAGATTTGATCAATATAGCTGGTCTTTCCCAAGTACCTGATGGTGTAGCTTCTTGGCATGTTGCTGTGAGCAAGTATACAGATTCACCATTGCTTTCAGCAGCATTGCCAGTTTGGGACTCTTCTAATAAAAGTATTATGGCAGTTGTGGGGGTCACAACTGCACTTTATAGTGTAGGACAGCTAATGAGAGAACTAGTTGAGTTGCATAGTGGCCATATGTATTTGACTTCCCAAGAGGGTTACTTACTTGCAACTTCCACAAGTGCACCTCTATTGTCAAATTCATCAAATCGGCCTAAGCTTAAGATGGCTGTTGATTGTGAAAATGATGTAATACGACTTGGAGCTGAGTGGTTACAAAGAAATTATGGGAGCAATTTTCCATCAAGCCATGAGATTCATGTAGAGAATGCCAAGCTTGGCCACCAGCAATATTACATTGACTCATTTTTCCTAAACTTGAAGAGACTTCCTTTGGTAGGTGTAATCATCATACCAAGAAAGTACATCATGGGGCAAGTAGATGAAAGAGCCTTCAAAACGTTGGTTATTCTGATATCTGCATCATTATGTATTTTAGTCATTGGATGTGTTTGCATTTTGATATTGACAAACGGAGTATCAAAGGAAATGAATCTAAGAGCAGAACTAATAAATCAACTGGAAGCAAGAAGGAAGGCAGAGGCTTCAAGCAACTATAAAAGTCAATTCCTTGCAAATATGAGTCATGAACTGAGGACACCTATGGCAGCAGTAATTGGGTTGCTTGACATTCTCATATCTGATGACTGTCTCACAAATGAGCAATATTCAACAGTTACTCAAATAAGAAAATGCTCAACTGCTCTGCTGCGTCTTCTTAACAACATCTTGGATCTGAGCAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGACTTGGGACGGGAACTTGAAGGGCTTGTGGATATGTTTTCTGTTCAGTGCATTAACCACAATGTGGAGACTGTTTTAGACCTTTCTGATGATATGCCCAAGGTAGTTCGGGGTGATTCTGCTAGGGTAGTTCAAATATTTGCAAATTTGATCAACAATTCAATCAAGTTTACTCCATCGGGTCATATTATTCTGCGAGGATGGTGTGAAAACCCAAAATCTTGCAGTGAAAGTCCAAATTTTCCTCTTGACCAGAAGAAATCACGGAGTTTACAAAAGAGCAGAGAGAAGCCAAATGCAAAGAGAACATTTATGAGAGATAACAAAGTTATACTTTGGTTTGAAGTTGATGACACAGGCTGTGGTATTGACCCAAGCAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACCACTAGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGAAACTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTGTAAAAAAGGAGGGTTCAGGGACATTGATGCGATTAAGCTTGCTTCTCAGTGCACCCATGGATGTTACAGAACAACATTGTGCAGTAGATTTGAAAGACAGTGGCTTAGTGGTTAGTAGAATCACTCTTCTTGACCCATAG 2379 0.3985 MAENKDETCSERSLCSRGSMSNKFRYVFDRLCGYSTFWKKNSTPKGRRIFHRDVEKEEFQYASTHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTRKSLNSLAYGLRYELLQRPILRMWNILNSTSEITTAQVKLSEYVIRRYSNPATQAEQVELYEAMRAVTWALFASRKALNSITINYKNGFVQAFHRDLKDNNTFYIYSDLSNYSMVASNSNEISSLSTHQAWDDKAIHGNFSAIWYREPLDPVSGEKIGKAMQIAPEDLINIAGLSQVPDGVASWHVAVSKYTDSPLLSAALPVWDSSNKSIMAVVGVTTALYSVGQLMRELVELHSGHMYLTSQEGYLLATSTSAPLLSNSSNRPKLKMAVDCENDVIRLGAEWLQRNYGSNFPSSHEIHVENAKLGHQQYYIDSFFLNLKRLPLVGVIIIPRKYIMGQVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMNLRAELINQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKVVRGDSARVVQIFANLINNSIKFTPSGHIILRGWCENPKSCSESPNFPLDQKKSRSLQKSREKPNAKRTFMRDNKVILWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGEIKVVKKEGSGTLMRLSLLLSAPMDVTEQHCAVDLKDSGLVVSRITLLDP. 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00998 792 SMART HisKA_10 502 568 IPR003661 GO:0000155|GO:0007165
Seca10g00998 792 FunFam Histidine kinase 1-like protein 490 569 - -
Seca10g00998 792 Gene3D - 570 765 IPR036890 -
Seca10g00998 792 CDD HisKA 503 564 IPR003661 GO:0000155|GO:0007165
Seca10g00998 792 Pfam His Kinase A (phospho-acceptor) domain 503 568 IPR003661 GO:0000155|GO:0007165
Seca10g00998 792 Gene3D - 490 569 - -
Seca10g00998 792 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 490 569 IPR036097 GO:0000155|GO:0007165
Seca10g00998 792 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 557 760 IPR036890 -
Seca10g00998 792 PANTHER TWO-COMPONENT HISTIDINE KINASE 59 769 - -
Seca10g00998 792 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 615 762 IPR003594 -
Seca10g00998 792 SMART HKATPase_4 615 764 IPR003594 -
Seca10g00998 792 FunFam Ethylene receptor 1 568 767 - -
Seca10g00998 792 PRINTS Bacterial sensor protein C-terminal signature 689 703 IPR004358 GO:0016310|GO:0016772
Seca10g00998 792 PRINTS Bacterial sensor protein C-terminal signature 724 742 IPR004358 GO:0016310|GO:0016772
Seca10g00998 792 PRINTS Bacterial sensor protein C-terminal signature 707 717 IPR004358 GO:0016310|GO:0016772
Seca10g00998 792 PRINTS Bacterial sensor protein C-terminal signature 748 761 IPR004358 GO:0016310|GO:0016772
Seca10g00998 792 ProSiteProfiles Histidine kinase domain profile. 509 764 IPR005467 -
Seca10g00998 792 MobiDBLite consensus disorder prediction 654 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00998 Seca-Chr10 9580878 9585125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00998 23 784 Histidine Kinase Gene Family AT2G17820 73.238 0.0 1171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00998 - - gmx:100814068 1372.84