Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00984 ATGGGTATCTGTTTTTCCTCCACCAAGGTCAGCGGCTCTAATAGCAACACCGATAATCGTAAACGGAGCTCCAAGCCGCAATCCACGGCGGCGACGGAGACGGTGACGGTGCAGAAGCAGCAGCAGCAGCAAACATCGAGCGTTCATCGTCGGAAAGCGTCGGAAGATACACAGAAGAAGAATCAGCAGAGGAATTCTCAGCAGCAAAGGCCCAAAGAGAAAACGAGTTCACGGCGACAAGGGGGGCATATCCCATGTGGAAAGCGCACAGATTTCGGTTACGAGAAAGACTTTGATAAGAGATTCTCGCTTGGGAAATTGTTGGGGCATGGGCAATTTGGTTACACATATGTTGGAATTGATAAAGCGAATGGGGATCGCGTCGCTGTGAAGAGACTCGAGAAGAGCAAGATGGTTCTCCCCATAGCTGTTGAGGATGTTAAGAGAGAGGTCAAGATATTGAAAGAACTTACAGGCCATGAAAATGTGGTTCAGTTCTTTAATGCTTTTGAGGATGATTCTTACGTGTACATAGTTATGGAGTTATGCGAGGGTGGGGAACTGCTTGATCGGATATTGGCCAAAGACTTGTGTTCCAATGTGTGTTTTTCTTGTACCAGAACTTACTTTGTCTACCTTTACTTTATCAGGAAAGACAGCCGATATTCTGAAAAAGATGCAGCAGTTATTGTAAGGCAGATGCTTAAGGTTGCGGCTGAGTGTCATTTACATGGTTTGGTACATCGGGACATGAAACCAGAGAACTTTCTTTTCAAATCAACCAGAGAAGATTCACCTTTAAAGGCTACTGATTTTGGTTTGTCTGATTTCATAAAACCTGGAAAGAGGTTTCAAGATATTGTTGGAAGTGCATACTATGTTGCACCGGAAGTGTTAAAACGAAAGTCAGGCCCTGAATCAGATGTATGGAGTATTGGTGTGATTACATACATATTGCTTTGTGGGAGACGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGGTCTTACGGAACAAGCCTGATTTCCGCAGGAAACCATGGCCAACCATAAGTAATGCTGCAAAAGATTTTGTGAAGAAATTGTTGGTAAAAGATCCTAGGGCAAGATTAACTGCTGCTCAGGCTCTATCACATCCATGGGTTAGAGAAGGAGGAGAGGCATCGGAGATTCCTATTGATATATCTGTCTTGAACAACATGCGACAGTTTGTGAAGTATAGTCGATTGAAACAATTTGCCCTGAGGGCATTGGCTAGCACACTTGATGAAGTCGAGTTGTCTGATCTAAAAGATCAGTTTGATGCAATAGATGTGGACAAAAATGGTTCTATCAGTCTTGAGGAGATGAGACAGGCTCTTGCTAAAGATCTCCCTTGGAAGTTGAAAGAATCACGTGTACTAGAGATATTGCAAGCGATAGACAGCAACACAGATGGGTTAGTGGATTTCACCGAGTTTGTGGCAGCTACATTACATGTGCATCAGTTGGAGGAACATGACTCTGAGAAGTGGCAGCAACGGTCACAGGCTGCTTTTGAGAAATTTGACATAGATAAGGATGGCTACATTACTCCAGATGAACTTAGAATGCATACTGGTTTGAGAGGCTCCATTGATCCATTGCTTGAGGAGGCTGATATTGACAAAGATGGAAAAATCAGCTTACCAGAATTTCGTAGACTTCTAAGAACTGCAAGCATTGGTTCTCGAAATGTATCAAGCCCTAGCCACCGTCACAGCAGGAAGATCTAG 1761 0.4378 MGICFSSTKVSGSNSNTDNRKRSSKPQSTAATETVTVQKQQQQQTSSVHRRKASEDTQKKNQQRNSQQQRPKEKTSSRRQGGHIPCGKRTDFGYEKDFDKRFSLGKLLGHGQFGYTYVGIDKANGDRVAVKRLEKSKMVLPIAVEDVKREVKILKELTGHENVVQFFNAFEDDSYVYIVMELCEGGELLDRILAKDLCSNVCFSCTRTYFVYLYFIRKDSRYSEKDAAVIVRQMLKVAAECHLHGLVHRDMKPENFLFKSTREDSPLKATDFGLSDFIKPGKRFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNAAKDFVKKLLVKDPRARLTAAQALSHPWVREGGEASEIPIDISVLNNMRQFVKYSRLKQFALRALASTLDEVELSDLKDQFDAIDVDKNGSISLEEMRQALAKDLPWKLKESRVLEILQAIDSNTDGLVDFTEFVAATLHVHQLEEHDSEKWQQRSQAAFEKFDIDKDGYITPDELRMHTGLRGSIDPLLEEADIDKDGKISLPEFRRLLRTASIGSRNVSSPSHRHSRKI. 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00984 586 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672|GO:0006468
Seca10g00984 586 ProSiteProfiles EF-hand calcium-binding domain profile. 427 462 IPR002048 GO:0005509
Seca10g00984 586 MobiDBLite consensus disorder prediction 1 88 - -
Seca10g00984 586 Gene3D Transferase(Phosphotransferase) domain 1 212 396 - -
Seca10g00984 586 Gene3D Phosphorylase Kinase; domain 1 95 192 - -
Seca10g00984 586 Pfam Protein kinase domain 104 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00984 586 MobiDBLite consensus disorder prediction 1 48 - -
Seca10g00984 586 Gene3D - 400 494 - -
Seca10g00984 586 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Seca10g00984 586 CDD STKc_CAMK 101 383 - -
Seca10g00984 586 SMART serkin_6 102 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00984 586 FunFam Calcium-dependent protein kinase 28 425 494 - -
Seca10g00984 586 ProSiteProfiles EF-hand calcium-binding domain profile. 544 571 IPR002048 GO:0005509
Seca10g00984 586 ProSitePatterns EF-hand calcium-binding domain. 440 452 IPR018247 -
Seca10g00984 586 FunFam CDPK-related kinase 1 95 187 - -
Seca10g00984 586 SUPERFAMILY Protein kinase-like (PK-like) 99 395 IPR011009 -
Seca10g00984 586 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Seca10g00984 586 Gene3D - 410 564 - -
Seca10g00984 586 ProSitePatterns Protein kinases ATP-binding region signature. 108 131 IPR017441 GO:0005524
Seca10g00984 586 Pfam EF-hand domain pair 430 493 IPR002048 GO:0005509
Seca10g00984 586 Pfam EF-hand domain pair 512 565 IPR002048 GO:0005509
Seca10g00984 586 PANTHER SERINE/THREONINE-PROTEIN KINASE 74 553 - -
Seca10g00984 586 FunFam calcium-dependent protein kinase 28-like 213 403 - -
Seca10g00984 586 SMART efh_1 510 538 IPR002048 GO:0005509
Seca10g00984 586 SMART efh_1 468 496 IPR002048 GO:0005509
Seca10g00984 586 SMART efh_1 431 459 IPR002048 GO:0005509
Seca10g00984 586 SMART efh_1 540 568 IPR002048 GO:0005509
Seca10g00984 586 ProSiteProfiles EF-hand calcium-binding domain profile. 506 541 IPR002048 GO:0005509
Seca10g00984 586 ProSiteProfiles Protein kinase domain profile. 102 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00984 586 ProSitePatterns EF-hand calcium-binding domain. 519 531 IPR018247 -
Seca10g00984 586 ProSitePatterns EF-hand calcium-binding domain. 549 561 IPR018247 -
Seca10g00984 586 SUPERFAMILY EF-hand 413 567 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00984 Seca-Chr10 9428746 9433747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00984 1 586 EF-hand Containing Proteins AT2G17890 74.667 0.0 880
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca10g00984 Pkinase 5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00984 K13412 - gmx:100817249 961.829