Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00978 ATGGAACCTCAACAACAACAACAGAGCCAACAACACTCACCAAACGAGGATGGCGGCAGTGGAAAAGGGGGGTTTCTGAGCAGGCAAAGTAGTACACGGTGGACTCCAACAACCGACCAGATAAGAATATTGAAGGACCTTTACTACAACAATGGAATTAGATCCCCAAGTGCAGAGCAGATTCAGAGGATCTCTGCTAGGCTGAGGCAGTACGGTAAGATTGAAGGCAAGAATGTCTTTTATTGGTTCCAGAACCACAAAGCTCGAGAAAGGCAGAAGAAAAGGTTCACTTCTGATGTTCCCATGCAAAGACCCCCAACAAATGCTACTTCTTGGAAACCTGATGAACCCAAGTATTCTAACATTTCACCTACTGATGTCTTGTCTTATATAGGGATCTCTCCAGTGGCTTCATCATCTTCTGCTGAAATGGTTACTATGGGCCAGATAGGGAATTATGGGTATGGATCTATGCCCATGGAAAAAAGTCTTAGGGACTGCTCAATATCAGCTGGTGGAGGTAGCAGTGGTCATGTTGGAAGTGGCATAAACCACAACTTGGGATGGGTGGGTGTGGATCCATATTCCTCTGCTTACGCCAATTTGTTTGACAAAATAAGGCCAAGTGATGAAATCCTGGAAGAAGAACAAGAGAATGGTTCCCCTGAGATTGAAACCCTCCCTTTATTCCCTATGCACGGTGAGGACATCCATGGCTATTGCAACCTCAAGTCTAATTCTTCTTCTAACTATGATGGTGGCTGGTATCAGACTGCAGAAGAAGGAGGGTTCAACAATGGTACTTCTCGTACTTCCTTGGAGCTCAGCCTCAACTCTTACACCCGCAGATCTCCAGATTATGCTTGA 867 0.4533 MEPQQQQQSQQHSPNEDGGSGKGGFLSRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDVPMQRPPTNATSWKPDEPKYSNISPTDVLSYIGISPVASSSSAEMVTMGQIGNYGYGSMPMEKSLRDCSISAGGGSSGHVGSGINHNLGWVGVDPYSSAYANLFDKIRPSDEILEEEQENGSPEIETLPLFPMHGEDIHGYCNLKSNSSSNYDGGWYQTAEEGGFNNGTSRTSLELSLNSYTRRSPDYA. 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00978 288 Gene3D - 26 92 - -
Seca10g00978 288 MobiDBLite consensus disorder prediction 1 37 - -
Seca10g00978 288 CDD homeodomain 32 94 IPR001356 GO:0003677
Seca10g00978 288 MobiDBLite consensus disorder prediction 1 17 - -
Seca10g00978 288 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 10 281 IPR044555 GO:0003700|GO:0099402
Seca10g00978 288 Pfam Homeodomain 31 92 IPR001356 GO:0003677
Seca10g00978 288 SUPERFAMILY Homeodomain-like 25 98 IPR009057 -
Seca10g00978 288 MobiDBLite consensus disorder prediction 92 118 - -
Seca10g00978 288 MobiDBLite consensus disorder prediction 101 118 - -
Seca10g00978 288 ProSiteProfiles 'Homeobox' domain profile. 27 93 IPR001356 GO:0003677
Seca10g00978 288 SMART HOX_1 29 97 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00978 Seca-Chr10 9336087 9338094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00978 25 236 Wox Gene Family AT2G17950 42.629 2.16e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca10g00978 Homeodomain 1.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00978 - - vra:106776674 419.853