Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00970 ATGAAGCGGACAAGGAAATCGAACACTGTTTCGTGGGCTTCTGGACCTAATCTGTGTCAGGTAAAATTGTTCTTATCTGAGGATTGTCCTTCAAAAGTTAGTCAGAAATCGCAAGATCATCTTCAAGTAAAGACATCGTCAATGTTGCCTTGGAGTACTAATGAATATGATGATGATTTACCACCCGGGTTTGAAGGCAATCATTTCCTGAGCCAACCAAAGGCTGTACTCTCTGACATTTCTCAGATTAGATGGAAATGCCCTCCTCTGTTTGCTTTCAGTAATCATTGGCGCGTTGCAGCTGGTGAAGAAAGTGGGGAGAAAAATAATCAGAAGCTAAGAGAAATGAGAGTGCTTGAAGCAGTTTATCCTCGTCCTTCTGCCATTCCTCCCAGCCCTTCGGTTTCTTTCGAGGTAGGGGCAGAAGATTATGATGATAGCCTCACTCCTCTCATCCCTATCATTCCTATTGAGGAAGAAGAATCCATGGATATTAATGGAGTTGCAGTCACAAAACCTGTGGACATTCCCAACAATTTGCAGTCACAATGCAAAGCCTCCTCTGCTAGTGTTCCCTCACCTGTCTGTGGAAAGCCTGTCCCTGGGATATCTCCTAGTTCGGAGGCAGATTTAGCTGCAGCTTCTACTGTCATAACAGCCATCATGAAAAGTAATGAGCAAGGAAGCTTGATTGATATGGATCTACTCCTTAAAATATTTAATGATCCAACAATGATTGGGAAATTAATTAACGAACATAGAACTGCAGCTTCCCCTGTTAGTGCATCCTCAAATAATGTGACTGTACCCACTTCTGAATCAAAATCTGTTACTTTATCAGTTCCATTGTCTAGACCTAAACCTGAGGTGGCAGCTTCTGGAACTACACCCATAAGAACAGTGGGTCTGTTACCTGTTTCTGGTCCAAAGCAAGCAACTCCATCAGAATCATTTTTGCCCCCAACACCTGATAAGCAAGTAATTCCACCTGTTTCAGTGTCTGCCTCTACTTTTGATAAGCCAACAACTCCATCACTTCCTTTGTTTAGGCCTGTGTCTGGTAAATCAGCAGAAAGTTACTCAGTTACATTGCATCAACCTCCATCTCCAACTCCATCTACTCCTATGCCTCATATGCACAAGCCTGGCAACAAAAATATTCCCCATTTGTCAAATGGAGTGATGCCGACTTTAAATACCCAATCTCCTCAACAAGATACAGTTCTGTCATCTGGGGTAAAGCGAGCAGCATCATTGGCTTTGCCTTCTGGTTCTGTTAATTTGCATGCTGTTGCAAACCAGGTGCTGTCCACTGCTAGTACTGTGCCTCATCAACCAGGTACTGGTTCTGGTTCTGGTTCAGCATTTGGTGTGAAGGAGGCCAACTATTATAAGAACCTTATTAGACAACATGGTGCAGATAAACAAGATGTGCAGGACTCACAAATAGGTATCCGTCATAATAATTTCCAAGATATGAAATCGGTACATAACATCATTAAACCAGGGGAAGTGATATTCAAAACTCAGAAACCTTGCATATACTTTAAAAGCTCAAGAGGGTGCCGAAATGGTTCCAATTGCCCTTATCAGCATGATATGTCGGCTCCATTGGGAGCTAGTAATGTCCTAGTGGCCCAAAGTGCAAAAAGAGTGAAACTAGCACCAGAAATTAAGAGTTGGATATAA 1689 0.4251 MKRTRKSNTVSWASGPNLCQVKLFLSEDCPSKVSQKSQDHLQVKTSSMLPWSTNEYDDDLPPGFEGNHFLSQPKAVLSDISQIRWKCPPLFAFSNHWRVAAGEESGEKNNQKLREMRVLEAVYPRPSAIPPSPSVSFEVGAEDYDDSLTPLIPIIPIEEEESMDINGVAVTKPVDIPNNLQSQCKASSASVPSPVCGKPVPGISPSSEADLAAASTVITAIMKSNEQGSLIDMDLLLKIFNDPTMIGKLINEHRTAASPVSASSNNVTVPTSESKSVTLSVPLSRPKPEVAASGTTPIRTVGLLPVSGPKQATPSESFLPPTPDKQVIPPVSVSASTFDKPTTPSLPLFRPVSGKSAESYSVTLHQPPSPTPSTPMPHMHKPGNKNIPHLSNGVMPTLNTQSPQQDTVLSSGVKRAASLALPSGSVNLHAVANQVLSTASTVPHQPGTGSGSGSAFGVKEANYYKNLIRQHGADKQDVQDSQIGIRHNNFQDMKSVHNIIKPGEVIFKTQKPCIYFKSSRGCRNGSNCPYQHDMSAPLGASNVLVAQSAKRVKLAPEIKSWI. 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00970 562 MobiDBLite consensus disorder prediction 329 343 - -
Seca10g00970 562 ProSiteProfiles Zinc finger C3H1-type profile. 507 535 IPR000571 GO:0046872
Seca10g00970 562 MobiDBLite consensus disorder prediction 256 378 - -
Seca10g00970 562 MobiDBLite consensus disorder prediction 256 281 - -
Seca10g00970 562 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 2 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00970 Seca-Chr10 9266155 9272939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00970 82 153 Homeobox Transcription Factor Family AT4G02560 43.056 6.28e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca10g00970 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00970 - - gmx:102661587 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00970 10 9266155 9272939 Seca10g00970 10 9266155 9272939 ECH