Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00967 ATGTCTGAGAGGCTGACTGTGAGCGTGGATGTACTCCAAGTGTGGGGTTCTGTTCTTGTTGATATATACCCCAAGTGTGCAAGAGTTGAGGATGGATTGCTATTTGAGGTTTGGAACCCACTAGGAATAGTAGGTGTAATCACTGCTTTCAATTTTCCATGTACTGTTCTAGGATGGAATGCTTGGATTGCATTAGTTTGCGGTAGCTGTGTTGTGTGGAATGGCCCTCCCGGCACGGGCAAAACATCGACTATTCTCGCTGTGGCACGCAAATTATATGGTACCCAATACTACAATGTGATTTTGGAGCTCAATGCTTCGGATGATAGAGGAATTGATGTTGTACGACAGCAGATTCAAGATTTTGCTAGCACTCAAAGCTTATCATTTGGAATCAAGTCCTCTGTAAAACTGGTCTTGTTAGATGAAGTCGATGCCATGACAAAGAATGCCCAATTTGCATTACGTAGAGTGATTGAGAAATATACAAAAGGCACCAAGTTTGCACTTATCTGTAATCATGTAGACAAGATTATTCCAGCACTTCAATCAAGATGCACTCGGTTTCGGTTTGCCCCTACTAATGTTGTTAATAAGCCACAAAATATTACTTATAAAGGATTAATTGACTTGGTGACTGAGACAGATAAAATGAGTGAAGCTGCCATATTAGAAGTGGTGAAAAATAATTTTGAAGATCATCTTATTCTCGGGGAAGAAGGAGGAATCATAGGAGATGCAGCATCTGATTATCTCTGGTGCATTGATCCTTTAGATGGGACTACAAACTTTGCACATGGCTATCATTTAGCTTTAGGAATTGTAGAAGCTTGTTTGTTAGTGCTTGTTGAGTTCTTCTCTTGGTTTCAAGTTAGTATTGGTTAA 885 0.4 MSERLTVSVDVLQVWGSVLVDIYPKCARVEDGLLFEVWNPLGIVGVITAFNFPCTVLGWNAWIALVCGSCVVWNGPPGTGKTSTILAVARKLYGTQYYNVILELNASDDRGIDVVRQQIQDFASTQSLSFGIKSSVKLVLLDEVDAMTKNAQFALRRVIEKYTKGTKFALICNHVDKIIPALQSRCTRFRFAPTNVVNKPQNITYKGLIDLVTETDKMSEAAILEVVKNNFEDHLILGEEGGIIGDAASDYLWCIDPLDGTTNFAHGYHLALGIVEACLLVLVEFFSWFQVSIG. 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00967 294 SUPERFAMILY Carbohydrate phosphatase 200 271 - -
Seca10g00967 294 PRINTS Inositol monophosphatase superfamily signature 210 230 IPR000760 -
Seca10g00967 294 PRINTS Inositol monophosphatase superfamily signature 253 269 IPR000760 -
Seca10g00967 294 PRINTS Inositol monophosphatase superfamily signature 232 248 IPR000760 -
Seca10g00967 294 Pfam Aldehyde dehydrogenase family 7 88 IPR015590 GO:0016491
Seca10g00967 294 Pfam ATPase family associated with various cellular activities (AAA) 74 191 IPR003959 GO:0005524|GO:0016887
Seca10g00967 294 Gene3D - 61 189 IPR027417 -
Seca10g00967 294 Pfam Inositol monophosphatase family 207 270 IPR000760 -
Seca10g00967 294 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 196 IPR027417 -
Seca10g00967 294 SMART AAA_5 67 197 IPR003593 GO:0016887
Seca10g00967 294 CDD AAA 75 193 - -
Seca10g00967 294 ProSitePatterns Inositol monophosphatase family signature 1. 253 266 IPR020583 -
Seca10g00967 294 Gene3D - 190 293 - -
Seca10g00967 294 SUPERFAMILY ALDH-like 28 87 IPR016161 GO:0016491
Seca10g00967 294 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 74 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00967 Seca-Chr10 9234280 9235164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00967 75 205 Core DNA Replication Machinery Family AT1G77470 82.443 7.49e-70 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00967 K10756 - gmx:100782652 223.016