Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00961 ATGTCTGCCGCCGGAGAAGGTGATGCTCCCGCCGTCGAAAAGCCGGTGGAGGAGGTGAAAGCGCCGGAGGAGCCTAAGCCTGTGAAGGAGAAGAAGCCTAAGGCTCCAAAAGAGAAGAAGCCCAAACAACCTAAGGCCAAAACCGCTTCACATCCTCCATATTTTCAGCAGATGATCAAGGAGGCCTTGTTGGCTCTGAACGAGAAGGGAGGTTCGAGCCCTTATGCCATCGCCAAGTACATGGAGGAGAAGCACAAGTCGGTGCTACCTGCGAATTTCAAGAAGATCCTTGGCTTGCAGCTGAAGAATCAAGCAGCAAGAGGGAAGCTGGTGAAGGTTAAGGCTTCGTATAAGCTATCTGAAGCCGCGAAGAAGGAGAAAAAGGATAGTACTGCTGCTAAGGCTGCGAAGGCCAACACAGAGAAGCAGCCACAGCGTCCAAAACGTACCAGAGCCGTAACCGCCACTGCTCCGAAGAGCAAAAAAAGTGAGGCTCCTAAGAAGGCCGGGAAAAAGAAGACGAAGAAGGTGTCTACTTTGCCTGCGAAGCCCAAACAGCCCAAGTCCATCAAGTCTCCTTCTAAGAGGGCTAGGAAAGCTACTGCTGCTACTGCGTGA 618 0.5227 MSAAGEGDAPAVEKPVEEVKAPEEPKPVKEKKPKAPKEKKPKQPKAKTASHPPYFQQMIKEALLALNEKGGSSPYAIAKYMEEKHKSVLPANFKKILGLQLKNQAARGKLVKVKASYKLSEAAKKEKKDSTAAKAAKANTEKQPQRPKRTRAVTATAPKSKKSEAPKKAGKKKTKKVSTLPAKPKQPKSIKSPSKRARKATAATA. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00961 205 SUPERFAMILY "Winged helix" DNA-binding domain 48 131 IPR036390 -
Seca10g00961 205 PRINTS Histone H5 signature 166 183 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca10g00961 205 PRINTS Histone H5 signature 65 82 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca10g00961 205 PRINTS Histone H5 signature 38 59 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca10g00961 205 PRINTS Histone H5 signature 136 150 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca10g00961 205 MobiDBLite consensus disorder prediction 1 54 - -
Seca10g00961 205 SMART h15plus2 48 116 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca10g00961 205 CDD H15 48 128 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca10g00961 205 MobiDBLite consensus disorder prediction 120 148 - -
Seca10g00961 205 MobiDBLite consensus disorder prediction 165 179 - -
Seca10g00961 205 Gene3D - 45 132 IPR036388 -
Seca10g00961 205 MobiDBLite consensus disorder prediction 120 205 - -
Seca10g00961 205 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 50 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca10g00961 205 PANTHER HISTONE H1 26 199 - -
Seca10g00961 205 MobiDBLite consensus disorder prediction 11 34 - -
Seca10g00961 205 Pfam linker histone H1 and H5 family 51 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00961 Seca-Chr10 9216738 9217604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00961 53 119 Single Myb Histone (SMH) Gene Family AT1G72740 37.313 9.06e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00961 K11275 - gmx:100500169 156.377