Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00959 ATGATGGAGTCGATGGAGTCATGTGTCCCACCAGGTTTTCGGTTCCACCCAACAGATGAAGAGCTTGTTGGTTATTATCTCAGGAAGAAAGTTGCTTCTCAGAAGATTGACCTTGATGTTATCAGAGAGATCGATCTATATCGTATTGAACCATGGGATCTCCAAGAAGATGTGAATGATATGGCAGAGAGATGCAGGATTGGGTATGAAGAGCAGAATGAGTGGTATTTCTTTAGCCACAAAGATAAGAAGTATCCAACAGGGACAAGAACTAACAGAGCTACAATGGCTGGGTTCTGGAAGGCAACAGGAAGAGATAAGGCAGTATATGACAAAATGAAACTAATTGGGATGAGGAAGACACTTGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAAACTGACTGGATCATGCATGAGTATAGGCTTGAATCTGATGAAAATGGACCTCCACAGGCAAGCACCAGCTCCATATATATTCTTTTACGCGAGGAAGGATGGGTTGTGTGCAGGGCATTCAAGAAAAGAACCACCAATGGCCAAACGAAGGCTATTGAAGGATGGGATACAAGCTACTTCTATGATGAAGCAAGTGGGGTCAGCTCAGTGGTGGATCCAATTGATCTCATTTCAAGACAACCTCAAAGCTTTTTAGCTCAAAATTTCTTGTGTAAGCAAGAGATAGAAGCAGACAACTTAAGCATCTGCATGCAACCAGAGCAATTTGTACAGCTTCCTCAACTAGAAAGCCCTTCTTTGCCATTAGTGAAAAGGCCAAGCACAGTGTCCCTAATATCAGACAATAATGAAGATGATGATCCAAACAGGTTATTATCCAACAACACACAGAAAGTGACTGATTGGAGAGCTCTTGACAAGTTTGTGGCTTCTCAACTGAGTCAAGAAGACAGGCTTGAAACTAATGCACTGACAAGCTTTGAAGCTCATACTAGCTCAGACATGGCCTTGCTGCTACTGCAGAGTAGTAGGGATGAAGGGAACAAGTTAAGCCCTTTTCTAAATCCAAGCTCAGACTGTGATATTGGGATATGCGTATTTGAAAAATGA 1071 0.423 MMESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQEDVNDMAERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKMKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLESDENGPPQASTSSIYILLREEGWVVCRAFKKRTTNGQTKAIEGWDTSYFYDEASGVSSVVDPIDLISRQPQSFLAQNFLCKQEIEADNLSICMQPEQFVQLPQLESPSLPLVKRPSTVSLISDNNEDDDPNRLLSNNTQKVTDWRALDKFVASQLSQEDRLETNALTSFEAHTSSDMALLLLQSSRDEGNKLSPFLNPSSDCDIGICVFEK. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00959 356 SUPERFAMILY NAC domain 5 176 IPR036093 GO:0003677|GO:0006355
Seca10g00959 356 FunFam NAC domain-containing protein 18 180 - -
Seca10g00959 356 Gene3D NAC domain 18 180 IPR036093 GO:0003677|GO:0006355
Seca10g00959 356 ProSiteProfiles NAC domain profile. 9 176 IPR003441 GO:0003677|GO:0006355
Seca10g00959 356 Pfam No apical meristem (NAM) protein 10 144 IPR003441 GO:0003677|GO:0006355
Seca10g00959 356 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00959 Seca-Chr10 9194208 9196465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00959 2 355 NAC Transcription Factor Family AT2G18060 61.340 4.41e-156 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca10g00959 NAM 1.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00959 - - aprc:113869508 613.609