Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00957 ATGCCTCCGTTACTTCTTCTTCTTCTCATGATGCTGTGCGCACCGTTCTTATCGTGCGCCGACCGAAGCGCTGAGATCCAAGCCTTGACGTCGTTCAAGCTCAACCTTCATGATCCTCTCGGAGCTCTCAACGGTTGGGATCCTTCGTCGCCGGTGGCGCCGTGTGACTGGCGCGGCGTTGCCTGCAATGACGACCGAGTCACGGAGCTTCGCTTGCCTCGCCTTCAACTCGGTGGTAGACTCAGTGACCGTCTTTCAGAGTTGCGCATGCTGCGCAAGATAAGCCTTCGTTCCAACTCCTTCAACGGTACCATTCCTTCGTCGCTCTCGAAATGCACGCTCCTACGCTCTGTGTTCTTGCAGGACAACTCATTTTCCGGTAACCTTCCGTCGGAGATCGGGAACATCACCGGCCTTCAGATTCTCAACGTTGCTCAGAATCGTCTCTCCGGTAGCGTCCCCGGCGAGCTTCCTCTCGGTCTCAAGTACCTCGACTTCTCGTCGAACGCCTTTTCCGGCGAGTTTCCGAGCAGCATTGCCAATCTCTCTCAGCTTCAGCTCATCAACCTGTCGTACAACCAGTTCTCCGGCGAGATTCCGGGGAGCTTCGGGGAGCTTCAGCAGCTGCAATACCTCTGGCTTGACCACAACTTGCTGGAAGGAACCCTTCCTTCGGCGCTCGCGAATTGCTCCTCGCTCGTGCATCTCAGCGCAGAAGGAAATGCACTTGGCGGCGTGGTCCCGTCGGCGATTTCGGCGCTTCCGAAGCTTCAGGTGTTGTCCCTCTCACAGAACAATTTCACTGGCTCCATTCCAGCTTCCGTTTTCTGTAATGTTTCGGTCTACGCGCCGTCGCTTCGGATTGTTCAACTTGGATTCAATGGTTTCACGGATTTCGTTGGACCTGAGTCCAACACGTGTTCCAGTGTTCTTCAGGTTTTGGATATTCGGCACAATCGCATACGGGGCACGTTTCCCTTGTGGTTAACCAATGTAACCACATTGTCAGTGCTTGATGTTTCGAGCAATGCACTTTCTGGTGAGATTCCGCCGCAGATAGTAAACCTCATCAAGTTGGAGGAATTGAAGATGGCTAATAATTCCTTTACTGGCATCATTCCGGTGGAAATCAAGAAATGTGGGTTCCTGAGTGTTGTTGATTTTGAAGGCAACGATTTTGGTGGAGAAGTCCCTTCGTTTTTCGGTGATATGATGGGCCTGAAGGTGCTATCCCTTGGTGGGAATCACTTCTCTGGTTCAGTTCCGGTGAGTTTTGCTAACCTTTCCTCTCTTGAAACCTTGAGTTTGAGTGGCAATAACTTAAATGGAAGTATGCCTGAGATGATAATGAGGTTGAGCAATTTGACAACACTGGACCTTAGTGGGAACAAGTTCACGGGTCAAATTTATGGCAGTATAGGGACTCTGAATCGGTTAATGGTTCTCAATCTGAGTGGCAATGGTTTCTCTGGAAAAATCCCTGCTAGTTTGGGAAATCTTTTCAGGCTAACTACACTTGACTTGAGCAAACAAAATCTCTCTGGAGAGTTACCTTTTGAGCTCTCTGGGCTGCCTAATCTGCAAGTTATTGCTCTGCAGGAGAACAAGTTATCTGGGGATGTACCTGAAGGGTTTAGCAGTTTGATGAGTTTGCAGTACCTGAACCTCAGTTCTAATGCTTTTTCTGGGCATATTCCTGAAAACTATGGCTTTCTTCGTTCGTTGGTTGTTCTTTCATTGTCTCATAATCACATTACAGGAACAATTCCTCCAGAAATTGGAAACTGCTCTGATATTGAAATTCTTGAGCTTGGATCAAATTCTTTGGCAGGTCATATTCCTGCTGATCTCTCTCGCCTCACCCATTTGAAAGTGCTTGATTTAGGTGGTAACAATTTAACTGGGGATATGCCTGGGGATATCTCCAAATGCTCGTCATTAACAGCTTTGTTAGTGGATCACAACCATCTTTCAGGTGCCATACCAGGGTCATTGTCAGATCTATCAAACCTAACAATGCTGGATCTCTCTGTTAACAACTTGAGTGGGGAAATTCCGAGTAACTTTTCTATGATCCATGGTTTGGTGTACTTCAATGTCTCAGGGAATAACCTCGAAGGTGAGATACCACCAACTTTGGGATCACGATTCAACAACTCCTCTGTATTTGCAGATAATCAGGGTTTATGTGGGAAGCCTTTGGAAACGAAGTGCGAAGATATAGACAGTAGGGACAAAAAGAGGTTGATTGTGTTGGTTATCATCATTGCATCCGGAGCTTGCCTCTTAGTCATGTTTTGCTGCTTCTATATCTTCAGCTTATTGAGATGGCGTAAGAAGCTGAAAGAGAGAGTTTCAGGGGAAAAGAAAAAGAGTCCTGCTAGAGCCAGTTCTGGAGCAAGTGGAGGCCGTGGCAGCAGTGATAATGGAGGGCCAAAACTTGTCATGTTCAACAACAAAATTACACTTGCTGAAACAATTGAAGCAACCAGACAATTCGACGAAGAGAATGTGCTGAGCAGAACAAGGTATGGATTAGTATTCAAGGCTTGCTACAACGATGGAATGGTCCTTTCCATTCGCAGGCTCCCTGATGGATCACTGGATGAGAACATGTTCAGGAAAGAAGCTGAATCACTAGGCAAAGTCAAGCACCGAAATTTAACCGTTCTCAGAGGTTACTATGCTGGGCCACCTGACATGAGACTCCTAGTCTACGATTACATGCCCAATGGAAACCTTGCAACCCTACTCCAAGAAGCTTCTCATCAAGATGGCCATGTTCTAAATTGGCCAATGAGACACCTCATTGCTCTAGGAATTGCCCGTGGTTTAGCCTTCATACACCAATCCTCAATGGTTCATGGGGACGTGAAACCGCAGAATGTTTTGTTCGATGCAGACTTCGAAGCCCATTTATCAGATTTTGGGTTAGAAAGTCTAACAGTAGCCACTCCAGGTGAAGCCTCCTCTTCAACTTCCGTTGGCACGGTGGGTTATGTATCCCCAGAAGCAATCTTAACCGGCGAAGCCACGAAAGAGTCTGATGTGTACAGCTTTGGCATTGTGTTGTTAGAGCTTCTGACAGGAAAGAGACCTGTAATGTTCACCCAGGATGAAGACATAGTGAAGTGGGTGAAAAAACAACTGCAGAGGGGTCAAATAACGGAGCTATTGGAACCAGGTTTGCTTGAGTTGGACCCAGAATCATCAGAGTGGGAAGAGTTCTTACTGGGTGTGAAAGTAGGGTTGCTTTGCACAGCACCAGACCCTTTTGATCGACCAACCATGTCTGACATCGTTTTCATGCTCGAGGGTTGCCGTGTCGGTCCTGATATCCCATCCTCCGCAGATCCCACCTCTCAACCTTCCCCGGCATAA 3381 0.4753 MPPLLLLLLMMLCAPFLSCADRSAEIQALTSFKLNLHDPLGALNGWDPSSPVAPCDWRGVACNDDRVTELRLPRLQLGGRLSDRLSELRMLRKISLRSNSFNGTIPSSLSKCTLLRSVFLQDNSFSGNLPSEIGNITGLQILNVAQNRLSGSVPGELPLGLKYLDFSSNAFSGEFPSSIANLSQLQLINLSYNQFSGEIPGSFGELQQLQYLWLDHNLLEGTLPSALANCSSLVHLSAEGNALGGVVPSAISALPKLQVLSLSQNNFTGSIPASVFCNVSVYAPSLRIVQLGFNGFTDFVGPESNTCSSVLQVLDIRHNRIRGTFPLWLTNVTTLSVLDVSSNALSGEIPPQIVNLIKLEELKMANNSFTGIIPVEIKKCGFLSVVDFEGNDFGGEVPSFFGDMMGLKVLSLGGNHFSGSVPVSFANLSSLETLSLSGNNLNGSMPEMIMRLSNLTTLDLSGNKFTGQIYGSIGTLNRLMVLNLSGNGFSGKIPASLGNLFRLTTLDLSKQNLSGELPFELSGLPNLQVIALQENKLSGDVPEGFSSLMSLQYLNLSSNAFSGHIPENYGFLRSLVVLSLSHNHITGTIPPEIGNCSDIEILELGSNSLAGHIPADLSRLTHLKVLDLGGNNLTGDMPGDISKCSSLTALLVDHNHLSGAIPGSLSDLSNLTMLDLSVNNLSGEIPSNFSMIHGLVYFNVSGNNLEGEIPPTLGSRFNNSSVFADNQGLCGKPLETKCEDIDSRDKKRLIVLVIIIASGACLLVMFCCFYIFSLLRWRKKLKERVSGEKKKSPARASSGASGGRGSSDNGGPKLVMFNNKITLAETIEATRQFDEENVLSRTRYGLVFKACYNDGMVLSIRRLPDGSLDENMFRKEAESLGKVKHRNLTVLRGYYAGPPDMRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFIHQSSMVHGDVKPQNVLFDADFEAHLSDFGLESLTVATPGEASSSTSVGTVGYVSPEAILTGEATKESDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPFDRPTMSDIVFMLEGCRVGPDIPSSADPTSQPSPA. 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00957 1126 PANTHER UNNAMED PRODUCT 311 1037 - -
Seca10g00957 1126 Gene3D Phosphorylase Kinase; domain 1 809 908 - -
Seca10g00957 1126 Gene3D Ribonuclease Inhibitor 22 157 IPR032675 -
Seca10g00957 1126 SUPERFAMILY Protein kinase-like (PK-like) 812 1114 IPR011009 -
Seca10g00957 1126 Pfam Leucine rich repeat 502 560 IPR001611 GO:0005515
Seca10g00957 1126 Pfam Leucine rich repeat 406 465 IPR001611 GO:0005515
Seca10g00957 1126 Pfam Leucine rich repeat 600 657 IPR001611 GO:0005515
Seca10g00957 1126 FunFam Uncharacterized protein 254 470 - -
Seca10g00957 1126 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Seca10g00957 1126 FunFam Inactive leucine-rich repeat receptor-like protein kinase 161 249 - -
Seca10g00957 1126 ProSiteProfiles Protein kinase domain profile. 833 1113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00957 1126 Pfam Protein kinase domain 843 1100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00957 1126 SMART LRR_sd22_2 332 358 - -
Seca10g00957 1126 SMART LRR_sd22_2 668 691 - -
Seca10g00957 1126 SMART LRR_sd22_2 206 232 - -
Seca10g00957 1126 SMART LRR_sd22_2 254 281 - -
Seca10g00957 1126 SMART LRR_sd22_2 158 184 - -
Seca10g00957 1126 SMART LRR_sd22_2 620 649 - -
Seca10g00957 1126 SMART LRR_sd22_2 428 457 - -
Seca10g00957 1126 SUPERFAMILY RNI-like 397 713 - -
Seca10g00957 1126 Gene3D Ribonuclease Inhibitor 158 299 IPR032675 -
Seca10g00957 1126 SUPERFAMILY RNI-like 68 395 - -
Seca10g00957 1126 Pfam Leucine Rich Repeat 479 500 IPR001611 GO:0005515
Seca10g00957 1126 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 909 1112 - -
Seca10g00957 1126 MobiDBLite consensus disorder prediction 788 812 - -
Seca10g00957 1126 ProSitePatterns Serine/Threonine protein kinases active-site signature. 953 965 IPR008271 GO:0004672|GO:0006468
Seca10g00957 1126 SMART LRR_typ_2 572 596 IPR003591 -
Seca10g00957 1126 SMART LRR_typ_2 332 356 IPR003591 -
Seca10g00957 1126 SMART LRR_typ_2 668 691 IPR003591 -
Seca10g00957 1126 SMART LRR_typ_2 206 229 IPR003591 -
Seca10g00957 1126 SMART LRR_typ_2 620 644 IPR003591 -
Seca10g00957 1126 SMART LRR_typ_2 476 500 IPR003591 -
Seca10g00957 1126 SMART LRR_typ_2 254 278 IPR003591 -
Seca10g00957 1126 SMART LRR_typ_2 88 112 IPR003591 -
Seca10g00957 1126 SMART LRR_typ_2 524 547 IPR003591 -
Seca10g00957 1126 SMART LRR_typ_2 182 205 IPR003591 -
Seca10g00957 1126 SMART LRR_typ_2 404 427 IPR003591 -
Seca10g00957 1126 SMART LRR_typ_2 428 451 IPR003591 -
Seca10g00957 1126 SMART LRR_typ_2 452 472 IPR003591 -
Seca10g00957 1126 Gene3D Ribonuclease Inhibitor 448 747 IPR032675 -
Seca10g00957 1126 FunFam Nuclear pore complex protein NUP107 22 160 - -
Seca10g00957 1126 FunFam LRR receptor-like serine/threonine-protein kinase 551 617 - -
Seca10g00957 1126 SMART serkin_6 833 1103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00957 1126 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 618 738 - -
Seca10g00957 1126 FunFam Putative LRR receptor-like serine/threonine-protein kinase 796 908 - -
Seca10g00957 1126 FunFam Uncharacterized protein 472 550 - -
Seca10g00957 1126 Gene3D Ribonuclease Inhibitor 300 380 IPR032675 -
Seca10g00957 1126 Gene3D Ribonuclease Inhibitor 381 447 IPR032675 -
Seca10g00957 1126 Gene3D Transferase(Phosphotransferase) domain 1 909 1112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00957 Seca-Chr10 9166777 9170157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00957 5 1126 Receptor kinase-like Gene Family AT4G36180 70.749 0.0 1546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Seca10g00957 Pkinase 1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00957 - - gmx:100795838 1911.73