Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00954 ATGCGAACTCTTTGTGACGCTTGTGAGAGTGCTGCTGCTATTGTTTTCTGCGCCGCTGATGAGGCTGCACTCTGCCGTGCCTGCGATGAGAAGGTTCACATGTGCAATAAGCTAGCTAGTAGGCATGTAAGAGTTGGTCTTGCAAGTCCAAGTGATGTGCCACGCTGTGACATATGCGAGAATGCACCTGCTTTCTTCTATTGCGACACAGATGGAAGTTCTCTTTGTTTACAGTGTGATATGATAGTCCATGTTGGAGGTAAAAGAACGCATGGGAGATATCTTCTGTTTAGGCAAAGAGTTGAGTTTCCAGGTGATAAATCTAGTCATGGAGAAAACCCAGCTTCCCAACCTCTGGAACCAGGTGAGACTAAAAGGGGACAAAATCCACTTCCCAAACTAAAAATGGGAGAGAAGCAACAAAATCACAGGATGTCTCTGGTTCCAACGCCAGAACCTGATGCTGATGGGCATACCAAGATGGAAACTAAAATGATTGATTTGAACATGAAGCCTAACAGAATACATGAACAAGCATCAAATAATCAGGTTAGAGTGCATGGGAAGTATATTTTGTCTGGTTAG 585 0.441 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCDTDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKSSHGENPASQPLEPGETKRGQNPLPKLKMGEKQQNHRMSLVPTPEPDADGHTKMETKMIDLNMKPNRIHEQASNNQVRVHGKYILSG. 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00954 194 MobiDBLite consensus disorder prediction 105 158 - -
Seca10g00954 194 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Seca10g00954 194 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 169 - -
Seca10g00954 194 CDD Bbox1_BBX-like 56 96 - -
Seca10g00954 194 Gene3D Classic Zinc Finger 2 91 - -
Seca10g00954 194 FunFam B-box zinc finger protein 19 2 92 - -
Seca10g00954 194 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Seca10g00954 194 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Seca10g00954 194 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Seca10g00954 194 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Seca10g00954 194 CDD Bbox1_BBX-like 4 47 - -
Seca10g00954 194 SMART bboxneu5 1 47 IPR000315 GO:0008270
Seca10g00954 194 SMART bboxneu5 51 96 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00954 Seca-Chr10 9139902 9142787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00954 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 61.749 3.71e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Seca10g00954 zf-B_box 5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00954 - - gmx:100780544 372.474