Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00946 ATGGAACAACCGCAGCCGGAAACAGCTGTGAGCCTTGGAACTCCCGAGTTGGCCGCGGCGGAGCTTTTGAGCCGCGGTGTTAGGGATTTGGAGGAGTCGCGCCTCGTCGGAGTTCCTGTAGCGCTCGCTTGCGATGTTGACATGGCAGAGAGAGAAGGTGGTTGCTGCGCGCCCAATTTGGAGGTCGCCGTCGTGGACGGCGCTATTTTGAAGAGGAAGCGGGGTCGTCCAGCGAAAGGAACTCCGAAAACGACTCCTCCGCCGAGGCAGAAGAAGGACGAGGAGGATGTTTGTTTCATATGCTTCGACGGCGGGAGCCTCGTTCTCTGCGATCGCCGGGGTTGCCCCAAAGCGTATCATCCCTCATGTATTAAGCGAGACGAGGAGTTCTTCCGATCAAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCACTTGTCAGAGGGCATCCCATTACATGTGCTACACTTGTACGTTTTCTTTGTGCAAGGGATGTACAAAAGATGCTGATTTTGTTTTAATCAGAGGAAATAAAGGTTTGTGTGGAATATGCATGAGAACTATAATGCTGATTGAGAACAGTGCCCAGGGAAATAAGGAAATGGTACGCAAAACTTTCTTGTCTATGCTGTGTGATGTGGATTTCGATGACAAGAGCAGCTGGGAGTATCTTTTCAAGGTTTATTGGATGTATTTGAAAGGGAAGCTGTCTTTAACGTTTGATGAACTCCTTAGAGCTAAAAACCCATTTAATGGTGCTGCTCCTATGAGCTGTAAAGTTCAAACTCCCCATGAACTTTATCATCTAAAAGATGACAAAGGTTCTGGTTCTGAGAACTCCTGTATAGACATAGAATCAAATAATTTGAAAAACAAGAAGTATAAGAGACAGCCAAAGCTTCTTAGTAAAGGGGATTGCTTTGATAGGATAACTTCTGCTGGTGACACTGGTGTGTCTTTGCCTGAATGCATGAAATGGGCATCAAAGGAACTTCTAGAGTTTGTTGCACATATGAAAAATGGTGATACATCTCTCCTGTCTCAATTTGATGTCCAGAGTCTCCTGCAGGATTATGTAAAGAAAAATAATCTCCGTGATCCTGAACAGAAGTCCCAAATTGTTTGTGACTCTAGACTAGTAAATTTGTTTGGAAAAGCACGTGTTGGCTACATTGAAATGCTAATGCTCCTTGAACCTCACTTTCTCATAAAAGATAATAGCCGTGCAGAAAATGCTTTTGGAGCTGGAATTATTGATGCTGTTGCTAATGAGGGGGAGGCAATTGACAATTACAATAAACAGTTGATGTCAGTTAATGATAAGAGATGTATAACAAGTAAAAAGGCCGATGTGCTAGTGCCACAAAATAATCCAGATGCATATGCTGCTATAAATGCTCACAACATTAACTTGATCTACTTACGGCGAAGTCTGATGGAAAGTTTAATGGATGATACTGAAAAGATTGAGAAGGTTGTTGGTTCTTTTGTGCGGATAAGAATCTCTAGTGGTGATCAGAAACAAGATATGTACAGGCTTGTCCAAGTTGTAGGTACAAACAAGGTTGCTGAACCTTACAAAATTGGCACAAGCACAACTGATATTAAGCTTGAAATTTTGAACTTAAACAGGAAGGAGGTCATATCCATAGATGAGATTTCGAATCAGGAGTTCTCTGAGGACGAATGCAAGCGTTTGCGTCAGAGTATAAAGTATGGGCTCTCAAAGAGACTGACTGTGGGAGAGATTCTGGACAAAGCATTGACACTTCAAGCAATTAGAGCTAATGATTTGCTGGAAGCGGAGATATTGCGGCTTAATCATCTTCGTGATAGAGCAAGTGAAAAGGGGCACAGAAAAGAATATCCTTTACCATTTACCACTTTACATTCCGTTGTCAATCCCCCTCCCATTATGCTAAACTAG 1929 0.4303 MEQPQPETAVSLGTPELAAAELLSRGVRDLEESRLVGVPVALACDVDMAEREGGCCAPNLEVAVVDGAILKRKRGRPAKGTPKTTPPPRQKKDEEDVCFICFDGGSLVLCDRRGCPKAYHPSCIKRDEEFFRSKAKWNCGWHICSTCQRASHYMCYTCTFSLCKGCTKDADFVLIRGNKGLCGICMRTIMLIENSAQGNKEMVRKTFLSMLCDVDFDDKSSWEYLFKVYWMYLKGKLSLTFDELLRAKNPFNGAAPMSCKVQTPHELYHLKDDKGSGSENSCIDIESNNLKNKKYKRQPKLLSKGDCFDRITSAGDTGVSLPECMKWASKELLEFVAHMKNGDTSLLSQFDVQSLLQDYVKKNNLRDPEQKSQIVCDSRLVNLFGKARVGYIEMLMLLEPHFLIKDNSRAENAFGAGIIDAVANEGEAIDNYNKQLMSVNDKRCITSKKADVLVPQNNPDAYAAINAHNINLIYLRRSLMESLMDDTEKIEKVVGSFVRIRISSGDQKQDMYRLVQVVGTNKVAEPYKIGTSTTDIKLEILNLNRKEVISIDEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILDKALTLQAIRANDLLEAEILRLNHLRDRASEKGHRKEYPLPFTTLHSVVNPPPIMLN. 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00946 642 SMART PHD_3 97 143 IPR001965 -
Seca10g00946 642 SUPERFAMILY Plus3-like 465 592 IPR036128 GO:0003677
Seca10g00946 642 SUPERFAMILY FYVE/PHD zinc finger 92 142 IPR011011 -
Seca10g00946 642 FunFam Zinc finger CCCH domain-containing protein 19 465 593 - -
Seca10g00946 642 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 62 624 - -
Seca10g00946 642 FunFam Zinc finger CCCH domain-containing protein 19 88 187 - -
Seca10g00946 642 ProSiteProfiles SWIB/MDM2 domain profile. 321 404 IPR003121 -
Seca10g00946 642 SMART swib_2 321 407 IPR019835 -
Seca10g00946 642 SUPERFAMILY SWIB/MDM2 domain 326 403 IPR036885 -
Seca10g00946 642 Pfam Plus-3 domain 469 571 IPR004343 GO:0003677
Seca10g00946 642 Coils Coil 597 617 - -
Seca10g00946 642 SMART rtf1 464 573 IPR004343 GO:0003677
Seca10g00946 642 CDD PHD5_NSD 97 142 - -
Seca10g00946 642 ProSitePatterns Zinc finger PHD-type signature. 98 158 IPR019786 -
Seca10g00946 642 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 186 IPR013083 -
Seca10g00946 642 Gene3D SWIB/MDM2 domain 320 411 IPR036885 -
Seca10g00946 642 ProSiteProfiles Zinc finger PHD-type profile. 95 161 IPR019787 -
Seca10g00946 642 ProSiteProfiles Plus3 domain profile. 464 596 IPR004343 GO:0003677
Seca10g00946 642 CDD SWIB-MDM2_like 327 402 - -
Seca10g00946 642 Gene3D - 465 593 IPR036128 GO:0003677
Seca10g00946 642 Pfam SWIB/MDM2 domain 329 402 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00946 Seca-Chr10 9081413 9089028 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00946 95 166 PHD Transcription Factor Family AT5G36670 37.838 1.10e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Seca10g00946 Plus-3 7.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00946 - - aprc:113869503 1027.7