Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00940 ATGCTTTACCAAACTCCCTATCTCCATATCTTTCAATTTCATCCCTTACCTTCTTCCTCCATTCCCCTTACAAGTGCAACCAAATCCCCTCTGTTTTCTCATCTTCCTTCCCCTCAGGCTGAAAGAGAAATGGAGTGTGTAGAAGGAGCTTTGAAGACCAGTTTTAAGAAAGACATGAACATGAGCATAAAACTCAGCCAGCAAACGTTCATGGAGGAACTATCGGGGGTTAGTGCGCAAAATGGTGCCTCAAGCGATGACTTTTTCGTGGACGACCTCCTTGACTTCTCGCACGTGGAAGAAGAACCAGAACAAAACAAAGAAGAAGACTCTGCTTGTGTCTCCCTTCAAAAAGAGAACCAAAGCCATGAAATTTGCAACCCCGGCACCAGTCACTCTTTCAAAGACAATTATGCCTCTCTTCCCACCAGCGAGCTTAGCCTTCCGACGGATGACGTGGCGGACTTGGAGTGGTTGTCTCATTTCGTTGAGGATTCCTTCTCAGAATTCTCTACTGCCTTCCCCACCATAACCATAACGGAGAACCCAAAGGCAAAAGAGGCAGAGCCCGGGCCTGGGCCCGGGCCTGAACGGGAAAGCCCGGTTTTCACCCAGCCATGTTTCAAAACTCCGGTTCAGACCAAAGCCAGAAGCAAGCGAACCAGAACCGGTGTTCGGGTTTGGCCACTCGGGTCACCACCTTCCTTCACCGAGTCTTCCTCAAGCTCCACCACCACCTCCTCCTCCTCTTCTTCGTCCCCTTCCAGCCCCTTGCTGCTTTACACCAACTTAGCCCAAAGCTTCGAGCAGGTTTGCTCAGAGGCAAGGCCGCCGCCGGCGAAGAAACTGAAAAGAGCCACTTCCGATGGAGCGGGGCCAGGCGCGGCCGTCCAGGCGCCACGAAGGTGCAGCCATTGCGGTGTGCAGAAGACCCCTCAGTGGCGAACCGGGCCGCTCGGTGCAAAAACACTGTGCAACGCATGCGGGGTCCGATACAAGTCGGGTCGGCTCTTGCCCGAATACAGGCCCGCTTGTAGCCCCACATTCTCCAGTGAATTACACTCAAACCATCACCGTAAAGTGCTGGAGATGCGGCGGAAGAAGGAGATAGGTGGGGTTGATACCGGTTTGGCCCCTGCTGCTGTTGTTCCTAGTTTTTGA 1161 0.5314 MLYQTPYLHIFQFHPLPSSSIPLTSATKSPLFSHLPSPQAEREMECVEGALKTSFKKDMNMSIKLSQQTFMEELSGVSAQNGASSDDFFVDDLLDFSHVEEEPEQNKEEDSACVSLQKENQSHEICNPGTSHSFKDNYASLPTSELSLPTDDVADLEWLSHFVEDSFSEFSTAFPTITITENPKAKEAEPGPGPGPERESPVFTQPCFKTPVQTKARSKRTRTGVRVWPLGSPPSFTESSSSSTTTSSSSSSSPSSPLLLYTNLAQSFEQVCSEARPPPAKKLKRATSDGAGPGAAVQAPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEIGGVDTGLAPAAVVPSF. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00940 386 MobiDBLite consensus disorder prediction 233 256 - -
Seca10g00940 386 Gene3D - 295 369 IPR013088 GO:0006355|GO:0008270
Seca10g00940 386 SMART GATA_3 297 351 IPR000679 GO:0006355|GO:0043565
Seca10g00940 386 MobiDBLite consensus disorder prediction 271 298 - -
Seca10g00940 386 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 297 359 - -
Seca10g00940 386 ProSiteProfiles GATA-type zinc finger domain profile. 297 333 IPR000679 GO:0006355|GO:0043565
Seca10g00940 386 MobiDBLite consensus disorder prediction 180 256 - -
Seca10g00940 386 PANTHER GATA TRANSCRIPTION FACTOR 79 369 - -
Seca10g00940 386 FunFam GATA transcription factor 295 376 - -
Seca10g00940 386 Pfam GATA zinc finger 303 337 IPR000679 GO:0006355|GO:0043565
Seca10g00940 386 CDD ZnF_GATA 302 350 IPR000679 GO:0006355|GO:0043565
Seca10g00940 386 ProSitePatterns GATA-type zinc finger domain. 303 328 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00940 Seca-Chr10 8995215 8996776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00940 48 386 C2C2-Gata Transcription Factor Family AT5G66320 50.282 9.64e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca10g00940 GATA 5.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00940 - - gmx:100783966 443.351