Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00937 ATGGGTCGTGGGAAGATTGAGATAAAGTTGATTGAGAATCCTACCAACAGGCAAGTCACCTACTCCAAGAGACGCAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGCGATGCTAAGGTCTCTCTTATCATGTTCTCCAAAAACAACAAGATGCACGAATACATCAGCCCTGGCCTTACGTGTGATTCCTAA 201 0.4378 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTCDS. 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00937 66 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca10g00937 66 SUPERFAMILY SRF-like 2 61 IPR036879 GO:0003677|GO:0046983
Seca10g00937 66 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Seca10g00937 66 Gene3D - 13 65 IPR036879 GO:0003677|GO:0046983
Seca10g00937 66 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca10g00937 66 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca10g00937 66 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca10g00937 66 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 60 - -
Seca10g00937 66 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca10g00937 66 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
Seca10g00937 66 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00937 Seca-Chr10 8977683 8977883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00937 1 64 MADS-box Gene Family AT3G54340 78.125 6.96e-33 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca10g00937 SRF-TF 4.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00937 K09264 - gmx:100784496 129.413