Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00927 ATGGCGGGTTTATTTTCATTAGGCGGTAGAGGAGGAAGAGGGAGCAACAGCGAAGAGGAACAACAGAATGCAACGACTGAAATTCCTCCTCCTGATAGCTTATTCTGGTATAACAAGAATGAAGACGTCGTTTCCTCTTACCGAGGCTTCGAGCTATGGAACCAGAACCAACAGCAGCAACTCATGTCTCAATCTCAACCGCGCCCTCTCTTCCAGCAAGATCTTTACTCCTCCGCCGCTGCGCTAGGCGTAGGGCCGAGTAGGCCCGCCGATGATCATTCGCCGACGAGATCCGCCTTCATGATGAGCAGTGGAAGCGGAAGCGGCAGCGGAGGGATCAGCTGTCAGGATTGCGGGAACCAAGCGAAGAAGGATTGCCCTCACATGCGGTGCAGGACTTGCTGCAAGAGCCGTGGATTCGATTGCCAAACTCATGTGAAGAGCACTTGGGTTCCTGCTGCAAGGCGCCGCGAAAGACAACAGCAACAAGTGGCTAGTGGTGGTGGAGGAGGAGATGTTCCGAAAAGGCAGAGAGATCATAACCAGAGCTCTTCATCCCTCGCCTGCACTCGTTTACCTACTACAAACCCCTCACCCTCAGGGTTAGAGGAGGTGAATTTTCCTGCTGTGGTGAACTCTCCGGCGGAGTTTAGGTGCGTACGTGTTAGCTCCGTGGACGAGTCGGAGGAGGAATACGCATACTCAACGGCGGTGAACATTGGAGGGCATTTGTTCAAAGGAATTCTGTATGACTACGGTCCAGATGGGACGGCTGCTGCTGCTGCTGCTGCTGCCGGAAACAGCTCCTCCACGGGTGCTGCTGAACACCTTCAGCCCTTGAACCTGATTCAAGGTACCCCAGCCACTGCCGTTGGGACAATCGTGGATCCTTCTTCGTTGTATCCAGCTCCCCTTAACACCTACATGCCTGCTGTTAGTGGTACGCAATTCTTCCCCCACCCAAGATCTTGA 972 0.5391 MAGLFSLGGRGGRGSNSEEEQQNATTEIPPPDSLFWYNKNEDVVSSYRGFELWNQNQQQQLMSQSQPRPLFQQDLYSSAAALGVGPSRPADDHSPTRSAFMMSSGSGSGSGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAARRRERQQQQVASGGGGGDVPKRQRDHNQSSSSLACTRLPTTNPSPSGLEEVNFPAVVNSPAEFRCVRVSSVDESEEEYAYSTAVNIGGHLFKGILYDYGPDGTAAAAAAAAGNSSSTGAAEHLQPLNLIQGTPATAVGTIVDPSSLYPAPLNTYMPAVSGTQFFPHPRS. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00927 323 MobiDBLite consensus disorder prediction 82 106 - -
Seca10g00927 323 MobiDBLite consensus disorder prediction 15 29 - -
Seca10g00927 323 NCBIfam LRP1 C-terminal domain 207 254 IPR006511 -
Seca10g00927 323 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 306 IPR007818 GO:0003700|GO:0006355
Seca10g00927 323 MobiDBLite consensus disorder prediction 153 205 - -
Seca10g00927 323 MobiDBLite consensus disorder prediction 180 202 - -
Seca10g00927 323 Pfam Domain of unknown function (DUF702) 112 255 - -
Seca10g00927 323 MobiDBLite consensus disorder prediction 1 35 - -
Seca10g00927 323 NCBIfam putative zinc finger domain, LRP1 type 114 156 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00927 Seca-Chr10 8869807 8872299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00927 1 323 C2H2 Transcription Factor Family AT3G51060 46.316 1.11e-83 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Seca10g00927 DUF702 2.7e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00927 - - gmx:100814589 342.813