Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00908 ATGGCAGCGGAAAACAAAATCCTCATCCTCGGTGCTACCGGAGCCATTGGAAGACACATAGTATGGGCAAGTGTCAAAGCTGGAAATCCCACATATGCCTTGGTTAGGAAGACTGAGGGCAATGTTAACAAGCCAAAGCTCATCACAGCTGCTAATCCTGACACCAAGGAACAGCTCCTTGAGAGTTTCAAGAGTTCCGGAGTTATTCTGCTCGATGGTGACATGAATGACCATGAAAGTCTGCTTAAGGCAATCAAGCAAGTTGATGTTGTCATCTGCGCAGCTGGTAGACTACTAATAGACGATCAAGTGAAGATCATTGCAGCAATAAAAGAAGCTGGAAACATCAAGAGGTTCTTCCCATCTGAATTTGGGCTTGATGTGGACCGTCACGATGCGGTTGATCCAGTTAGAGAAGTTTTTGAGGACAAAGCAAAAATCAGAAGAGCAATTGAAGCTGAAGGAATTCCTTACACTTATCTCTGTTGTCATGCCTTTACTGGTTACTTCTTGCGTAACTTGGCACAGCTTGATGCCACTGTTCCTCCTAGGGACAAGGTTGTCATTCTAGGAGATGGAAATGTCAAAGGAGCTTATGTCACTGAGGCTGATGTGGGAACTTATACCATCAGAGCAGCAAATGACCCCAGAACGTTGAAGAAAGCAGTACACATAAGACTCCCAGCCAATTATTTGACCGCAAATGAGATCGTTTCCATGTGGGAGAAAAAGATTGGGAAGACTCTTGAGAAAACTTATGTTCCAGAGGAAAAAGTCCTTAAGGACATCAAGGAATCTTCATTCCCTAACAACTACCTGCTAGCATTGTACCACTCGCAGCAGATAAAGGGAGATGCAGTGTATGAGATTGACCCTGCCAAAGACGTTGAGGCTTATGAGTTTTATCCTGACGTGAAATACACCACCGCTGATGAATATTTGGACCAATTCGCTTTATTTTATGGTCTGAGCATGACCTATTTAAAACCTGAGATGGGTTTGTACTTTGTATGGTGGATCTTGGGTTTTGGTCAGCACAATGCCTTGGAGATGGAAATGTCAAAGGTAAAAGTGGATGATCCAAGAACATCGAACAAAATTCTGTACCTGAAACCCCCTGCCAATATTTTGACACTCAACGAACTCATCTCCTTATGGGAGAGCAAGATTAAGAGCACCCTCGAGAAAGTTTATGTCCCAGAGGATCAAATTCTTAAGAACATCCAGGAGTCTCCTTTCCCTCAGAGCCTCATCATGGCATTACTCCACTCAATCTTGGTAAAAGGGGATTGTACAAACTTTGAGGTTGACCCTTCTTTTGGTGTGGAGGCTTCTGAACTTTATCCTGAGTTTCTAAAGTCAGAGCTGAAACACCAGCTTCATTTGTTGATCAATCGTTTAACCACATTCATTATGGAGATGTCACCACCAAATAACCGATTTCCTCAGACTCCGCATTCCAGATTCTCAACCAAGAAGGGACGGAGTGGTTATGAACCATCAGACACAGAGACAGAGTGGCAAGAGATTCCACGTCATGAACGAGAAAGAAAGAACTTGAATTTGGGTCCTGAAGGAACAAAGACTCTGACTTTAATGAACAAAAGCCCCATAGCACTTCACAGGAGGTACCCTTCAAGGTTTGAAAATGAAGTCTCACCACCCTCAACAGGTCCACGAAGAAGACACCAAAGCAAGTCACCCTATAGGCTGCACATAGTAGATGATAGTGATGCTTCATCATCATTCATAGCAGGTTCGAACATGCACAGAAATATCAGTCCTTTGCCAAGACCTGACCTTGGAAGAACTGTGTCTCCTTATAACAGAAATCACGAGCAAAGAACACCTTCTGAGAAGACAAACTACAGGAGGGCAGTGACTGCTCCGAGATTGAGGGAACAACCAAGTAATTATGGGAAAACATTGCAGCAAAATGGGGGGAGAACCAAAGACATGGTTCTGAAACAAAGGGAAGCTTCTCCTTTCAAAGCACCTTCAGTTGGAGAAATCAATGAAATGATAGCACAGGTGAAACTATCCACAAATCCCACTAGTGATTATTCATCAGTGCTAGAAAGTACAGAGTCGATTCAACCAGGTGATCTGTTCTTTTCTCGTGAATGCAATGCCTTGCAAGGGAAGAATTCTTCTTTGCAAAAAAGTCTTCAACAATATGGGTATTTTAGCCCAAGGCCTCCACCAGTGACCACTATCAATCTCATGAGAGCCCCCACTGAAAACGGTAGCGTCAATATGAATAATATCCGAGGAACCTCATCCAATAATGTCTTGTCTCGATCAACCACGGGCACAATAAGTAGAAAGGGTAGTGGTACTGGGAAGCCAAGTTCTAGTGCTAGTGTGACAAGTGATGTTAGTGGAAAGACAAGTGAAAGCATACGGAAATTCATTTCCAACAGAAAAAAGAGCCAGAAAGATGCATGGTTTTCTTGTATGATGAGAACAGGAAACTGTAGGACGACAAGAAAATCACCTGAACGTCGACCAATTGATGAAGCTTCTTTCATTGAAAGGGCAATAGTAGTGGAAAGCCTTCCACAATTCTGGGCAGATAAACATCAACCTGCTTCACTTAATGGCTTCATTTGCAACAAACAAGAAGCTCAACTTCTCAAGGAATTAGTGTCTCAGGGCTCTTGTCCTCATATTTTGCTCAAAGGATCAGCTGGTTCCGGGAAAAGAGAACTAGCAATGGCTCTTCTTCGAGAAATATATGGTGATGCATGTTGTAATCCGTCCCATGATTTAAGACATTTCCCTATTCAGGACAAAAGGACAATGAAAGTATCTGTTCCAATAACATCAAGTTCTCATCACATGGAGCTCAATGTAAATTCAGAACCAAATGCTAAGTATGCTTTAATGGGATTAATCAAAGAAATTAGCAATATATATGCGATTACCCCTGAGGTCAGCAACATTAATTTCAAGTCAGATTATAAAGTAATAGTTCTTTATGAGGTTGACAAAGCAGTAGAGAACATCCAGCACATGATCAAATGGATCATAGACCGCTATTCAGATATATGCAAATTAGTACTCTGCTGTGAAGATGATGCAGACATTATTGGACCTGTGAAAAACCGGTTCAAAGTTATCAAAGTTGATGCTCCTCAAACTCACGAAATTACTGAGGTTCTTATTCAGATAGCAAAGAAAGAGGAAATTGATCTACCCATGAATTTTGCTATGAGGATTGCTACAAAAGCTAATCACAACCTCAGGGAAGCAATCATGGCTCTTGAAGTATGCAAAGCACACAACTATCCATTCTCAGAAGAACAACCAATTCCGGTTGGATGGGAGAATGTTGTAATAGAAGTTGCTGCAGAGATCCTAGCTGATCCATCATTTTCACGGCAAGAAATTTCTCTTTCCATCTTATTTTCTATGCTTATCTTACTTTCAATACGAGGGAAATTTCAAATGCTTCTCCTGGATTTTGTCCACCCCAAATTGATTCTCCTGAAACTGGTGCAGCAGCTTCTAAAAAGAATTGAGGCCAGCTTAAAAAGGGAGGTCTACTACTGGCATGCTTATTATGACAGAAGACTCCCCCCAGGAACAACAGCTTTACTAAAACTAGAGGAATTTGTTGCCAAGTTCATGAGCATATGCAGAAAAAGCTCAGGCAATCGGCAATTTGTATAG 3675 0.4185 MAAENKILILGATGAIGRHIVWASVKAGNPTYALVRKTEGNVNKPKLITAANPDTKEQLLESFKSSGVILLDGDMNDHESLLKAIKQVDVVICAAGRLLIDDQVKIIAAIKEAGNIKRFFPSEFGLDVDRHDAVDPVREVFEDKAKIRRAIEAEGIPYTYLCCHAFTGYFLRNLAQLDATVPPRDKVVILGDGNVKGAYVTEADVGTYTIRAANDPRTLKKAVHIRLPANYLTANEIVSMWEKKIGKTLEKTYVPEEKVLKDIKESSFPNNYLLALYHSQQIKGDAVYEIDPAKDVEAYEFYPDVKYTTADEYLDQFALFYGLSMTYLKPEMGLYFVWWILGFGQHNALEMEMSKVKVDDPRTSNKILYLKPPANILTLNELISLWESKIKSTLEKVYVPEDQILKNIQESPFPQSLIMALLHSILVKGDCTNFEVDPSFGVEASELYPEFLKSELKHQLHLLINRLTTFIMEMSPPNNRFPQTPHSRFSTKKGRSGYEPSDTETEWQEIPRHERERKNLNLGPEGTKTLTLMNKSPIALHRRYPSRFENEVSPPSTGPRRRHQSKSPYRLHIVDDSDASSSFIAGSNMHRNISPLPRPDLGRTVSPYNRNHEQRTPSEKTNYRRAVTAPRLREQPSNYGKTLQQNGGRTKDMVLKQREASPFKAPSVGEINEMIAQVKLSTNPTSDYSSVLESTESIQPGDLFFSRECNALQGKNSSLQKSLQQYGYFSPRPPPVTTINLMRAPTENGSVNMNNIRGTSSNNVLSRSTTGTISRKGSGTGKPSSSASVTSDVSGKTSESIRKFISNRKKSQKDAWFSCMMRTGNCRTTRKSPERRPIDEASFIERAIVVESLPQFWADKHQPASLNGFICNKQEAQLLKELVSQGSCPHILLKGSAGSGKRELAMALLREIYGDACCNPSHDLRHFPIQDKRTMKVSVPITSSSHHMELNVNSEPNAKYALMGLIKEISNIYAITPEVSNINFKSDYKVIVLYEVDKAVENIQHMIKWIIDRYSDICKLVLCCEDDADIIGPVKNRFKVIKVDAPQTHEITEVLIQIAKKEEIDLPMNFAMRIATKANHNLREAIMALEVCKAHNYPFSEEQPIPVGWENVVIEVAAEILADPSFSRQEISLSILFSMLILLSIRGKFQMLLLDFVHPKLILLKLVQQLLKRIEASLKREVYYWHAYYDRRLPPGTTALLKLEEFVAKFMSICRKSSGNRQFV. 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00908 1224 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 289 IPR036291 -
Seca10g00908 1224 Gene3D - 1108 1214 - -
Seca10g00908 1224 Pfam NmrA-like family 7 307 IPR008030 -
Seca10g00908 1224 PANTHER PINORESINOL REDUCTASE-RELATED 4 317 - -
Seca10g00908 1224 FunFam replication factor C subunit 3 1047 1105 - -
Seca10g00908 1224 Gene3D - 1048 1105 - -
Seca10g00908 1224 MobiDBLite consensus disorder prediction 492 509 - -
Seca10g00908 1224 FunFam Replication factor C subunit 3 855 1046 - -
Seca10g00908 1224 CDD PCBER_SDR_a 6 313 IPR045312 GO:0016491
Seca10g00908 1224 Gene3D - 163 314 - -
Seca10g00908 1224 Gene3D - 6 302 - -
Seca10g00908 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 855 1094 IPR027417 -
Seca10g00908 1224 Gene3D - 855 1046 IPR027417 -
Seca10g00908 1224 MobiDBLite consensus disorder prediction 476 509 - -
Seca10g00908 1224 MobiDBLite consensus disorder prediction 543 567 - -
Seca10g00908 1224 SUPERFAMILY post-AAA+ oligomerization domain-like 1108 1213 IPR008921 GO:0003677|GO:0006260
Seca10g00908 1224 MobiDBLite consensus disorder prediction 748 794 - -
Seca10g00908 1224 MobiDBLite consensus disorder prediction 476 491 - -
Seca10g00908 1224 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 303 423 IPR036291 -
Seca10g00908 1224 Gene3D - 337 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00908 Seca-Chr10 8673723 8684050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00908 856 1213 Core DNA Replication Machinery Family AT5G27740 37.950 4.03e-75 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00908 K10756 - gmx:100795321 1083.55