Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00902 ATGTACGCTGAATGCGGGTGTTCTGAGTCTGCAAGGAGGGTGTTTGAGGAAATGTCTGAACCGAATGTTGTCACGTGGAACGCTGTTGTCACTGCTTGTTTTAGGTGTGGAGACGTGGAAGGTGCGAGGGTTGTGTTTGCACGGATGCCCATAAGGAATTTGACCTCGTGGAATGTGATGCTTGCTGGTTACACTAAAGCGGGTGAGCTTGAGTTGGCAAGAAGAGTTTTTTCTGAAATGCCTTTGAAAGATGATGTTTCTTGGAGCACTATGATTGTTGGGTTTGCTCACAATGGTTCTTTTGATGAGGCTTTTGGATTTTTCAGGGAGTTGCTGCGTGAGGGGATCGTGCCCAATGAGGTGAGCCTGACTGGGGTATTGTCTGCTTGTGCGCAAGCTGGGGCGTTTGAATTTGGGAAGGTTTTACATGGGTTTATGGAGAAATCAGGGTTTCTTTACATTGTTTCAGTGAGTAATGCTCTCATAGATACCTACTCAAAGTGTGGGAATGTAGCTATGGCTCAGTTGGTCTTTCAAAATATGCCCATGACAAGGAGCATTGTGTCTTGGACATCGATGATAGCAGGCCTTGCAATGCTTGGTCATGGAGAAGAGGCAATAAGGCGTTTTCATGAGATGGAAGAGTCCGGAGTTAGGCCGGACGGTGTTGCTTTCATATCTCTCCTATATGCTTGTAGCCATAGTGGCTTGGTTGAGCAAGGGGATGCTTTCTTTTCCAAGATGAAGAATTTGTATGGTATTGAACCTGCCATTGAGCATTATGGTTGTATGGTTGATCTGTATGGTCGAGCTGCTAGGTTGCAGAAGGCCTATGAATTTATATGTCAAATGCCTATTTCACCTAATGCAATCATTTGGAGGACTCTCCTTGGGGCTTGTAGTATTCATGGCAACATTGAATTGGCAGAGCTTGTGAAAGCAAGGCTTGCTGAAATGGATCCAAACAACTCTGGTGACCATGTACTGCTCTCAAATGTTTATGCCATTGCAGGGAAATGGAAGGATGTTGCCAGCATAAGAAGAACAATGACTAAACAGAGCTTGAAAAAAACACCTGGTTGGAGCATGATTGAAATTGACAAGGTCATTTATGGTTTTGTGGCAGGTGAAAAGCCTAATGAGGATACAGAAGAGGCTCATGATAAGCTGAGGGAAATAATGTTGAGACTCAGGGCAGAAGTAGGTTATGCACCACAGGTAAGGAGTGTCTTGCATGATATTGAAGAGGAAGAAAAAGAAGATTCAGTGTCTATGCACAGTGAGAAGCTTGCTGCAGCTTTTGGGATAGCAAAACTTCCAAAGGGAAGGATTTTAAGAATAGTGAAGAACCTGAGGATTTGTGGGGACTGCCATACTGTGATGAAGCTGATTTCTAAAGTTTATCAAGTAGAAATCATTATAAACAAGTTGACAGACAGGCGAATCTCTGTGCTTGTGGACCACCTCATTTTCTGGGTGTCTCATGAGGAACACGATGGGAGAGAACCATGTTTGGTTATTCACACTTTCAACAATACAGGTGGGATTTTGCAAAATTTTGCAAAGATGAATGATTTGATGACGAAATCGTTCCTAAGTTATGTTGAACTGAAGAAACAGGCTCGGAAGGACCTTGAAGCCGATCTTGACATTGAAGCAGGGAAACTCAACCCCACAGAAGACCATAACCTCTCTCAGTTCTTCCAAGAAGTTGAAGCAATCAGGGTTGAAATGGAAGAGATTACCAATCTCTTATTTGATCTTCAGCAACTGAATGAAGAGACAAAGTCCACACACAGTGCCAAAGTTCTACGTGGGCTAAGAGATCGTATGGACTCTGACATGGTTGCCGTACTTCGCAAGGCAAAGATCATCAAGGCAAGGCTAGAGGTTCTTGACCAATCCAACATAGCCAATCGCAGTATATCAGAATCCTACAGAGAAGGAACCCCAATTGATAGAACGAGATTGTCTGTGACAAATGGTTTGAGGGTTAAGCTTAGGGACATGATGAATGATTTTCAGTCCTTGAGGAACAAGATTGTATCAGATCACAAGGAAGATTTGAAGAGAAGGTACTACACAGTAACGGGTGAGGTTCCCAGCGATGATGTCATGGAGAAGATGATTTCAGGGAGTCTCAAAGTTGAGTTTTTGGCTGGGAAAACAGAGGCTGACATGGGTACTCAGGTTAGGCACGAGGCAGTGATGGATATCCAGAGGAGTTTGAATAAGCTTCACCAGGTTTTTCTTGATATGGCTATTCTGGTTGAGACTCAGGGAGAAAACATAGATAACATTGAGGATAATGTGGCCAACGCTGGTCACTACATCCATGGTGGAACTAATAGTCTTTACTATGCTAGCCAGATGAAGAAGAGGAACAGAAAATGGGTCTATTGGGTTTTTGCTGTGGGGCTGATTGTACTGCTGGTGTGCATCATTGCAATGCTGTCTTCTTGA 2463 0.4361 MYAECGCSESARRVFEEMSEPNVVTWNAVVTACFRCGDVEGARVVFARMPIRNLTSWNVMLAGYTKAGELELARRVFSEMPLKDDVSWSTMIVGFAHNGSFDEAFGFFRELLREGIVPNEVSLTGVLSACAQAGAFEFGKVLHGFMEKSGFLYIVSVSNALIDTYSKCGNVAMAQLVFQNMPMTRSIVSWTSMIAGLAMLGHGEEAIRRFHEMEESGVRPDGVAFISLLYACSHSGLVEQGDAFFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICQMPISPNAIIWRTLLGACSIHGNIELAELVKARLAEMDPNNSGDHVLLSNVYAIAGKWKDVASIRRTMTKQSLKKTPGWSMIEIDKVIYGFVAGEKPNEDTEEAHDKLREIMLRLRAEVGYAPQVRSVLHDIEEEEKEDSVSMHSEKLAAAFGIAKLPKGRILRIVKNLRICGDCHTVMKLISKVYQVEIIINKLTDRRISVLVDHLIFWVSHEEHDGREPCLVIHTFNNTGGILQNFAKMNDLMTKSFLSYVELKKQARKDLEADLDIEAGKLNPTEDHNLSQFFQEVEAIRVEMEEITNLLFDLQQLNEETKSTHSAKVLRGLRDRMDSDMVAVLRKAKIIKARLEVLDQSNIANRSISESYREGTPIDRTRLSVTNGLRVKLRDMMNDFQSLRNKIVSDHKEDLKRRYYTVTGEVPSDDVMEKMISGSLKVEFLAGKTEADMGTQVRHEAVMDIQRSLNKLHQVFLDMAILVETQGENIDNIEDNVANAGHYIHGGTNSLYYASQMKKRNRKWVYWVFAVGLIVLLVCIIAMLSS. 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00902 820 Gene3D - 722 819 - -
Seca10g00902 820 CDD SNARE_syntaxin1-like 730 785 - -
Seca10g00902 820 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 431 IPR046960 GO:0003723|GO:0009451
Seca10g00902 820 Pfam PPR repeat family 83 131 IPR002885 -
Seca10g00902 820 Pfam PPR repeat family 186 232 IPR002885 -
Seca10g00902 820 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
Seca10g00902 820 Gene3D Tetratricopeptide repeat domain 1 137 IPR011990 GO:0005515
Seca10g00902 820 FunFam Pentatricopeptide repeat-containing protein At3g47530 249 430 - -
Seca10g00902 820 Gene3D - 559 690 - -
Seca10g00902 820 Pfam E motif 303 365 IPR046848 -
Seca10g00902 820 NCBIfam pentatricopeptide repeat 86 120 IPR002885 -
Seca10g00902 820 NCBIfam pentatricopeptide repeat 56 80 IPR002885 -
Seca10g00902 820 NCBIfam pentatricopeptide repeat 24 50 IPR002885 -
Seca10g00902 820 NCBIfam pentatricopeptide repeat 188 221 IPR002885 -
Seca10g00902 820 Gene3D Tetratricopeptide repeat domain 138 248 IPR011990 GO:0005515
Seca10g00902 820 Gene3D Tetratricopeptide repeat domain 249 398 IPR011990 GO:0005515
Seca10g00902 820 Coils Coil 574 594 - -
Seca10g00902 820 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Seca10g00902 820 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 726 788 IPR000727 -
Seca10g00902 820 Pfam PPR repeat 260 284 IPR002885 -
Seca10g00902 820 Pfam PPR repeat 159 181 IPR002885 -
Seca10g00902 820 Pfam PPR repeat 56 81 IPR002885 -
Seca10g00902 820 Pfam PPR repeat 24 50 IPR002885 -
Seca10g00902 820 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 561 692 - -
Seca10g00902 820 Pfam Syntaxin 566 761 IPR006011 GO:0016020
Seca10g00902 820 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 84 118 IPR002885 -
Seca10g00902 820 SMART tSNARE_6 721 788 IPR000727 -
Seca10g00902 820 FunFam Pentatricopeptide repeat-containing protein 144 239 - -
Seca10g00902 820 FunFam Syntaxin 132 721 819 - -
Seca10g00902 820 Pfam SNARE domain 762 812 IPR000727 -
Seca10g00902 820 SMART SynN_4 559 686 IPR006011 GO:0016020
Seca10g00902 820 Pfam DYW family of nucleic acid deaminases 402 475 IPR032867 GO:0008270
Seca10g00902 820 SUPERFAMILY t-snare proteins 561 781 IPR010989 GO:0016020|GO:0016192
Seca10g00902 820 Coils Coil 380 400 - -
Seca10g00902 820 CDD SynN 564 714 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00902 Seca-Chr10 8613871 8619745 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00902 523 820 SNARE and Associated Proteins AT2G18260 59.935 1.08e-126 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00902 - - lja:Lj4g3v1632020.2 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00902 10 8613871 8619745 Seca10g00902 10 8613871 8619745 ECH